Skip to content
@mskcc

Memorial Sloan Kettering

Pinned Loading

  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 378 218

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 147 68

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 227 repositories
  • argos-cwl Public

    A portable and reproducible pipeline for targeted analysis

    mskcc/argos-cwl’s past year of commit activity
    Common Workflow Language 0 0 5 2 Updated Jan 10, 2025
  • Penguin Public

    ecDNA detection pipeline for MSK Sequencing Data

    mskcc/Penguin’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 10, 2025
  • forte Public

    Functional Observation of RNA Transcriptome Elements/Expression

    mskcc/forte’s past year of commit activity
    Nextflow 7 MIT 0 22 4 Updated Jan 10, 2025
  • facetsHeatmap Public

    Visualization of copy number profile distributions in a cohort

    mskcc/facetsHeatmap’s past year of commit activity
    R 0 0 0 0 Updated Jan 10, 2025
  • igo-sample-qc-node Public

    Sample QC with nodejs backend

    mskcc/igo-sample-qc-node’s past year of commit activity
    JavaScript 0 0 0 1 Updated Jan 9, 2025
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 18 Updated Jan 7, 2025
  • argos-bam Public

    The CWL bam generator for ARGOS, separated into its own repo

    mskcc/argos-bam’s past year of commit activity
    Common Workflow Language 0 0 0 0 Updated Jan 7, 2025
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Jan 7, 2025
  • igo-delivery Public

    Delivery email, symlinks and permissions for IGO projects

    mskcc/igo-delivery’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 6, 2025
  • smile-server Public
    mskcc/smile-server’s past year of commit activity
    Java 2 4 74 2 Updated Jan 2, 2025
View all repositories

Most used topics

Loading…