[ENH] Add script to symlink Neurobagel query results on BIC

[alyssadai]

• Closes Create script for accessing cohort query matches on BIC planning#188

• TODO:

  • Once make the participants-results table nice for humans and machines query-tool#356 is addressed, update the hardcoded session path index
  • Create copy of script in /data/pd

Example:

(base) alyssayd@login1:~/alyssa/scratch$ ./symlink_neurobagel_results_on_bic.sh test_query_tool_results/bic_only_results.tsv test_cohort
Symlink created at: /data/origami/alyssa/scratch/test_cohort/qpn/bids/sub-MNI0079/ses-01
Symlink created at: /data/origami/alyssa/scratch/test_cohort/qpn/bids/sub-PD01382/ses-01
Symlink created at: /data/origami/alyssa/scratch/test_cohort/qpn/bids/sub-PD01448/ses-01
(base) alyssayd@login1:~/alyssa/scratch$ tree test_cohort/
test_cohort/
└── qpn
    ├── bids
    │   ├── sub-MNI0079
    │   │   └── ses-01 -> /data/pd/qpn/bids/sub-MNI0079/ses-01
    │   ├── sub-PD01382
    │   │   └── ses-01 -> /data/pd/qpn/bids/sub-PD01382/ses-01
    │   └── sub-PD01448
    │       └── ses-01 -> /data/pd/qpn/bids/sub-PD01448/ses-01
    └── README.md

8 directories, 1 file

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For new features:

• Tests have been added

For bug fixes:

• There is at least one test that would fail under the original bug conditions.

[surchs]

Thanks @alyssadai, this looks great

🧑‍🍳