generated from timeflux/timeflux_example
-
-
Notifications
You must be signed in to change notification settings - Fork 7
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
c87185b
commit 62c10a4
Showing
1 changed file
with
308 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,308 @@ | ||
| graphs: | ||
|
|
||
| # The publish/subscribe broker graph | ||
| - id: PubSubBroker | ||
| nodes: | ||
| # Allow communication between graphs | ||
| - id: Broker | ||
| module: timeflux.nodes.zmq | ||
| class: Broker | ||
| # class: BrokerLVC | ||
|
|
||
| # The main processing graph | ||
| - id: AcquireEEG | ||
| nodes: | ||
| # - id: random | ||
| # module: timeflux.nodes.random | ||
| # class: Random | ||
| # params: | ||
| # columns: 2 | ||
| # seed: 1 | ||
| # - id: acquire0 | ||
| # module: timeflux_neurofeedback_inverse_gamepad.nodes.hdf5 | ||
| # module: timeflux.nodes.hdf5 | ||
| # class: Replay | ||
| # params: | ||
| # filename: /tmp/20221217-195349.hdf5 | ||
| # keys: | ||
| # - /eeg/raw | ||
| # - Fp1 | ||
| # keys: [ Fp1, AF3 ] | ||
| # resync: False | ||
| - id: replay | ||
| module: timeflux_neurofeedback_inverse_gamepad.nodes.bdf | ||
| class: Replay | ||
| params: | ||
| filename: eeg/PAC_IMtest.bdf | ||
| keys: [ eeg ] | ||
| resync: False | ||
| # keys: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| # keys: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| # board: freeeeg32 | ||
| # channels: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| #serial_port: /dev/cu.usbmodem3067384E33301 # USB | ||
| # serial_port: /dev/cu.SLAB_USBtoUART # Optical | ||
| # serial_port: /dev/ttyACM0 | ||
|
|
||
| # - id: acquire | ||
| # module: timeflux_brainflow.nodes.driver | ||
| # class: BrainFlow | ||
| # params: | ||
| # board: freeeeg32 | ||
| # channels: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| #serial_port: /dev/cu.usbmodem3067384E33301 # USB | ||
| # serial_port: /dev/cu.SLAB_USBtoUART # Optical | ||
| # serial_port: /dev/ttyS20 | ||
| # serial_port: /dev/ttyACM0 | ||
| # debug: true | ||
|
|
||
| - id: dejitter | ||
| module: timeflux.nodes.dejitter | ||
| class: Interpolate | ||
| params: | ||
| # rate: 200 | ||
| # rate: 64 | ||
| rate: 512 | ||
| - id: LocQuery | ||
| module: timeflux.nodes.query | ||
| class: LocQuery | ||
| params: | ||
| # key: [ Oz ] | ||
| # key: [ C3, Cz, C4, O1, Oz, O2 ] | ||
| key: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| # key: [ AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| axis: 1 | ||
|
|
||
|
|
||
| # Receive EEG signal from the network | ||
| # - id: acquire | ||
| # - id: LSL | ||
| # module: timeflux.nodes.lsl | ||
| # class: Receive | ||
| # params: | ||
| # prop: name | ||
| # value: openvibeSignal | ||
| # unit: s | ||
| # sync: network | ||
| # prop: name | ||
| # value: EEG | ||
| # prop: type | ||
| # value: random | ||
| # unit: ns | ||
| # sync: None | ||
| # name: EEG | ||
| # name: signal | ||
| # channels: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| - id: RenameColumns | ||
| module: timeflux.nodes.axis | ||
| class: RenameColumns | ||
| params: | ||
| names: [ Fp1, AF3, F7, F3, FC1, FC5, T7, C3, CP1, CP5, P7, P3, Pz, PO3, O1, Oz, O2, PO4, P4, P8, CP6, CP2, C4, T8, FC6, FC2, F4, F8, AF4, Fp2, Fz, Cz ] | ||
| # Publish the raw EEG signal | ||
| - id: PublisherRaw | ||
| module: timeflux.nodes.zmq | ||
| class: Pub | ||
| params: | ||
| topic: raw | ||
| # Connect nodes | ||
| edges: | ||
| # - source: random | ||
| # - source: acquire | ||
| # - source: LSL | ||
| # target: RenameColumns | ||
| # - source: RenameColumns | ||
| - source: replay:eeg | ||
| target: LocQuery | ||
| - source: LocQuery | ||
| # target: dejitter | ||
| # - source: dejitter | ||
| # - source: LSL | ||
| target: PublisherRaw | ||
| # Run this graph 25 times per second | ||
| # rate: 3 | ||
| # rate: 10 | ||
| rate: 24 | ||
| # rate: 512 | ||
| # rate: 64 | ||
| # rate: 25 | ||
|
|
||
| # - id: AcquireGamepad | ||
| # nodes: | ||
| # - id: acquireInputDevice | ||
| # module: timeflux_neurofeedback_inverse_gamepad.nodes.gamepad | ||
| # class: InputDevice | ||
| # - id: PublisherInputDevice | ||
| # module: timeflux.nodes.zmq | ||
| # class: Pub | ||
| # params: | ||
| # topic: InputDevice | ||
| # edges: | ||
| # - source: acquireInputDevice | ||
| # target: PublisherInputDevice | ||
| # rate: 10 | ||
|
|
||
| - id: StreamToBrowser | ||
| nodes: | ||
| # Receive data streams from the broker | ||
| - id: Subscriber | ||
| module: timeflux.nodes.zmq | ||
| class: Sub | ||
| params: | ||
| topics: | ||
| # topics: [ raw, bands ] | ||
| # - bdf | ||
| - raw | ||
| # - highpass1hz | ||
| # - alpha | ||
| # - beta | ||
| # - alpha_beta_abs_avg | ||
| # - bands | ||
| # - iirfilter | ||
| # - gamepad | ||
| - coherence | ||
| # - InputDevice | ||
| - id: monitor | ||
| module: timeflux_ui.nodes.ui | ||
| class: UI | ||
| edges: | ||
| - source: Subscriber:coherence | ||
| target: monitor:eeg_coherence | ||
| # - source: Subscriber:gamepad | ||
| # target: monitor:eeg_gamepad | ||
| # - source: Subscriber:bdf | ||
| # target: monitor:eeg_bdf | ||
| # - source: Subscriber:bands | ||
| # target: Recorder:eeg_bands | ||
| # - source: Subscriber:iirfilter | ||
| # target: Recorder:eeg_iirfilter | ||
| - source: Subscriber:raw | ||
| target: monitor:eeg_raw | ||
| # - source: Subscriber:highpass1hz | ||
| # target: monitor:eeg_highpass1hz | ||
| # - source: Subscriber:alpha | ||
| # target: monitor:eeg_alpha | ||
| # - source: Subscriber:beta | ||
| # target: monitor:eeg_beta | ||
| # - source: Subscriber:alpha_beta_abs_avg | ||
| # target: monitor:eeg_alpha_beta_abs_avg | ||
| # - source: Subscriber:InputDevice | ||
| # target: monitor:gamepad_InputDevice | ||
| # - source: Subscriber:bands | ||
| # target: monitor:eeg_bands | ||
| # - source: Subscriber:iirfilter | ||
| # target: monitor:eeg_iirfilter | ||
| # Update file every second | ||
| # rate: 1 | ||
| # rate: 64 | ||
| # rate: 512 | ||
| # rate: 3 | ||
| rate: 24 | ||
| # rate: 10 | ||
|
|
||
| - id: StreamToRequests | ||
| nodes: | ||
| # Receive data streams from the broker | ||
| - id: Subscriber | ||
| module: timeflux.nodes.zmq | ||
| class: Sub | ||
| params: | ||
| topics: | ||
| - coherence | ||
| - id: requestsstreamer | ||
| module: timeflux_neurofeedback_inverse_gamepad.nodes.requestsstreamer | ||
| class: RequestsStreamer | ||
| params: | ||
| hostname: '127.0.0.1'#'127.0.0.1' | ||
| port: '7860'#'7860' | ||
| fn_index: 3 | ||
| # fn_index: 2 | ||
| format_str: "sj" | ||
| str_array: ["coherence"] | ||
| # attention_type: "coherence" | ||
| # - id: LocQuery | ||
| # module: timeflux.nodes.query | ||
| # class: LocQuery | ||
| # params: | ||
| # key: [ C4__C3 ] | ||
| # axis: 1 | ||
| edges: | ||
| - source: Subscriber:coherence | ||
| # target: LocQuery | ||
| # - source: LocQuery | ||
| target: requestsstreamer | ||
| # Update file every second | ||
| # rate: 1 | ||
| # rate: 64 | ||
| # rate: 512 | ||
| # rate: 3 | ||
| rate: 24 | ||
| # rate: 10 | ||
|
|
||
| # The recorder graph | ||
| - id: ProcessToCircle | ||
| nodes: | ||
| # Receive data streams from the broker | ||
| - id: Subscriber | ||
| module: timeflux.nodes.zmq | ||
| class: Sub | ||
| params: | ||
| topics: | ||
| # topics: [ raw, bands ] | ||
| - raw | ||
| - id: CoherenceWindow | ||
| module: timeflux.nodes.window | ||
| class: Window | ||
| params: | ||
| # length: 1.0 | ||
| length: 0.625 | ||
| step: 0.1 | ||
| # step: 0.002 | ||
| - id: Coherence | ||
| module: timeflux_neurofeedback_inverse_gamepad.nodes.coherence | ||
| class: SpectralConnectivityEpochs | ||
| params: | ||
| # ch_names_pick: ['C3','C4','Cz'] | ||
| ch_names_pick: ['Fp1','AF3','F7','F3','FC1','FC5','T7','C3','CP1','CP5','P7','P3','Pz','PO3','O1','Oz','O2','PO4','P4','P8','CP6','CP2','C4','T8','FC6','FC2','F4','F8','AF4','Fp2','Fz','Cz'] | ||
| # epochs_con: 10 | ||
| epochs_con: 1 | ||
| # method: plv | ||
| # method: ciplv | ||
| method: coh | ||
| fmin: 8 | ||
| fmax: 12 | ||
| n_jobs: 1 | ||
| duration: 0.625 | ||
| overlap: 0.525 | ||
| sfreq: 512 | ||
| to_screen: False | ||
| # to_screen: True | ||
| # triangle: True | ||
| triangle: False | ||
| tri: 'both' | ||
| - id: PublisherCoherence | ||
| module: timeflux.nodes.zmq | ||
| class: Pub | ||
| params: | ||
| topic: coherence | ||
| - id: dejitter | ||
| module: timeflux.nodes.dejitter | ||
| class: Interpolate | ||
| params: | ||
| # rate: 200 | ||
| # rate: 64 | ||
| rate: 512 | ||
| # Connect nodes | ||
| edges: | ||
| # - source: acquire | ||
| - source: Subscriber:raw | ||
| target: dejitter | ||
| - source: dejitter | ||
| target: CoherenceWindow | ||
| - source: CoherenceWindow | ||
| target: Coherence | ||
| - source: Coherence | ||
| target: PublisherCoherence | ||
| rate: 24 | ||
| # rate: 10 | ||
|
|
||
|
|