Add teat and teat skin #2650
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@@ -10693,7 +10693,7 @@ xref: Wikipedia:Excretory_system | |
| xref: XAO:0000143 | ||
| xref: ZFA:0000163 | ||
| intersection_of: UBERON:8450002 ! excretory system | ||
| intersection_of: capable_of GO:0097254 ! renal tubular secretion | ||
| relationship: existence_ends_during UBERON:0000066 ! fully formed stage | ||
| relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} | ||
| relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} | ||
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@@ -44335,7 +44335,7 @@ xref: Wikipedia:Bronchus | |
| xref: XAO:0000121 | ||
| is_a: UBERON:0000117 ! respiratory tube | ||
| relationship: located_in UBERON:0002224 ! thoracic cavity | ||
| relationship: never_in_taxon NCBITaxon:8507 {source="Wikipedia"} ! Sphenodon | ||
| relationship: part_of UBERON:0007196 ! tracheobronchial tree | ||
| property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg xsd:anyURI | ||
| property_value: external_definition "Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000262", ontology="VHOG", source="http://bgee.unil.ch/"} | ||
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@@ -142976,7 +142976,7 @@ relationship: never_in_taxon NCBITaxon:8782 ! Aves | |
| relationship: only_in_taxon NCBITaxon:32524 {source="Wikipedia"} ! Amniota | ||
| relationship: part_of UBERON:0006635 {source="ISBN:0073040584"} ! anterior abdominal wall | ||
| relationship: part_of UBERON:0014478 ! rib skeletal system | ||
| relationship: present_in_taxon NCBITaxon:8508 {source="Wikipedia"} ! Sphenodon punctatus | ||
| property_value: taxon_notes "These bones may have been derived from the ventral scales found in animals like rhipidistians, labyrinthodonts, and Acanthostega, and may be related to ventral elements of turtle plastrons" xsd:string {source="WP"} | ||
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| [Term] | ||
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@@ -147582,7 +147582,7 @@ disjoint_from: UBERON:2000691 ! supraorbital bone | |
| relationship: has_quality PATO:0001598 {gci_relation="part_of", gci_filler="NCBITaxon:63221"} ! protruding | ||
| relationship: part_of UBERON:0000209 ! tetrapod frontal bone | ||
| relationship: part_of UBERON:0035849 ! orbital margin | ||
| relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis | ||
| relationship: seeAlso FMA:53097 | ||
| relationship: seeAlso FMA:57137 | ||
| property_value: external_ontology_notes "see also: 'supraorbital flange'. FMA has 2 related classes, but these refer to the line and surface" xsd:string {external_ontology="FMA"} | ||
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@@ -156551,7 +156551,7 @@ def: "A prominent bulge, or projection, of the occipital bone at the back of the | |
| xref: Wikipedia:Occipital_bun | ||
| is_a: UBERON:0005913 ! zone of bone organ | ||
| relationship: part_of UBERON:0001676 ! occipital bone | ||
| relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis | ||
| property_value: depicted_by https://upload.wikimedia.org/wikipedia/commons/d/db/Neanderthal_profile.png xsd:anyURI | ||
| property_value: taxon_notes "Occipital buns are important in scientific descriptions of classic Neanderthal crania. While common among many of mankind's ancestors, primarily robust relatives rather than gracile, the protrusion is relatively rare in modern Homo sapiens.." xsd:string {source="Wikipedia:Occipital_bun", taxon="NCBITaxon:63221"} | ||
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@@ -156669,7 +156669,7 @@ def: "The suprainiac fossa is an elliptic depression on the occiput above the su | |
| xref: Wikipedia:Suprainiac_fossa | ||
| is_a: UBERON:0004704 ! bone fossa | ||
| relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull | ||
| relationship: present_in_taxon NCBITaxon:63221 {source="Wikipedia:Neanderthal_anatomy"} ! Homo sapiens neanderthalensis | ||
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| [Term] | ||
| id: UBERON:0013462 | ||
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@@ -156732,7 +156732,7 @@ synonym: "retromolar gap" EXACT [Wikipedia:Retromolar_space] | |
| xref: Wikipedia:Retromolar_space | ||
| is_a: UBERON:0000464 ! anatomical space | ||
| relationship: part_of UBERON:0001684 ! mandible | ||
| relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis | ||
| property_value: taxon_notes "Retromolar gap is found in some Neandertals because they had midfacial prognathism. This caused the lower toothrow to move forward, which led to the retromolar gap.." xsd:string {source="Wikipedia:Neanderthal_anatomy", taxon="NCBITaxon:63221"} | ||
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| [Term] | ||
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@@ -158598,7 +158598,7 @@ comment: Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:04 | |
| synonym: "priapia" RELATED PLURAL [] | ||
| is_a: UBERON:0008811 ! intromittent organ | ||
| relationship: has_part UBERON:0001245 ! anus | ||
| relationship: only_in_taxon NCBITaxon:8075 ! Atheriniformes | ||
| relationship: part_of UBERON:0000033 ! head | ||
| relationship: present_in_taxon NCBITaxon:270656 | ||
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@@ -163469,7 +163469,7 @@ intersection_of: UBERON:0003821 ! metapodium bone | |
| intersection_of: has_fused_element UBERON:0013582 ! metapodium bone 2 | ||
| intersection_of: has_fused_element UBERON:0013583 ! metapodium bone 3 | ||
| intersection_of: has_fused_element UBERON:0013584 ! metapodium bone 4 | ||
| relationship: present_in_taxon NCBITaxon:51337 ! Jaculus jaculus | ||
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| [Term] | ||
| id: UBERON:0014763 | ||
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@@ -163486,7 +163486,7 @@ intersection_of: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 | |
| relationship: has_developmental_contribution_from UBERON:0003651 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 2 | ||
| relationship: has_developmental_contribution_from UBERON:0003652 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 3 | ||
| relationship: has_developmental_contribution_from UBERON:0003653 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 4 | ||
| relationship: present_in_taxon NCBITaxon:51337 ! Jaculus jaculus | ||
| property_value: taxon_notes "The cannon bone of the 3-toed jerboa (jaculus jaculus) is the postnatal fusion of the 3 central metatarsals, which are distinct ossified elements prenatally" xsd:string {source="PMID:22135653", taxon="NCBITaxon:51337"} | ||
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| [Term] | ||
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@@ -167847,7 +167847,7 @@ intersection_of: has_quality PATO:0001154 ! elongated | |
| intersection_of: has_quality PATO:0001598 ! protruding | ||
| intersection_of: has_quality PATO:0002255 ! grooved | ||
| intersection_of: intersects_midsagittal_plane_of UBERON:0003672 ! dentition | ||
| relationship: only_in_taxon NCBITaxon:40151 ! Monodon monoceros | ||
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| [Term] | ||
| id: UBERON:0015853 | ||
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@@ -171045,7 +171045,7 @@ id: UBERON:0017624 | |
| name: pseudoclasper | ||
| def: "One or more pairs of stiff ossified lobes or prongs found in the tip of the intromittent organ of Bythitoidei." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] | ||
| is_a: UBERON:0004529 ! anatomical projection | ||
| relationship: only_in_taxon NCBITaxon:181400 ! Bythitoidei | ||
| relationship: part_of UBERON:0008811 ! intromittent organ | ||
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| [Term] | ||
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@@ -188482,7 +188482,7 @@ comment: Uses to construct scent mounds | |
| is_a: UBERON:0000456 {source="cjm"} ! secretion of exocrine gland | ||
| relationship: has_part UBERON:0001088 ! urine | ||
| relationship: has_part UBERON:0013212 ! anal sac gland secretion | ||
| relationship: only_in_taxon NCBITaxon:29132 ! Castoridae | ||
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| [Term] | ||
| id: UBERON:0036016 | ||
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@@ -188492,7 +188492,7 @@ xref: BTO:0000605 | |
| xref: MESH:D006722 | ||
| xref: Wikipedia:Honey | ||
| is_a: UBERON:0036017 ! regurgitated substance | ||
| relationship: only_in_taxon NCBITaxon:7434 ! Aculeata <wasps, ants & bees> | ||
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| [Term] | ||
| id: UBERON:0036017 | ||
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@@ -188518,7 +188518,7 @@ id: UBERON:0036019 | |
| name: castor sac | ||
| def: "A non-glandular region of the anal wall in which castoreum is produced." [PMID:24415179] | ||
| is_a: UBERON:0008978 ! anal sac | ||
| relationship: only_in_taxon NCBITaxon:29132 ! Castoridae | ||
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| [Term] | ||
| id: UBERON:0036043 | ||
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@@ -211733,7 +211733,7 @@ synonym: "annuli" BROAD PLURAL [AAO:0010058] | |
| synonym: "annulus" BROAD [] | ||
| synonym: "caecilian annulus" EXACT [] | ||
| is_a: UBERON:3000977 ! body external integument structure | ||
| relationship: only_in_taxon NCBITaxon:43453 ! Caecilia | ||
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| [Term] | ||
| id: UBERON:3010060 | ||
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@@ -224493,6 +224493,25 @@ relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 | |
| relationship: has_part UBERON:0001384 ! primary motor cortex | ||
| relationship: has_part UBERON:0016634 ! premotor cortex | ||
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| [Term] | ||
| id: UBERON:8440078 | ||
| name: teat | ||
| def: "The projection from the mammary glands of mammals from which milk flows or is ejected for the purpose of feeding young. As compared to a nipple, where the individual lactiferous ducts open directly to the outside world, a teat has lactiferous ducts that converge on a large lactiferous sac at the base of the teat and there is a single, large duct that runs through the teat with an outlet at the end of the teat." [https://orcid.org/0000-0002-1572-1316, WikipediaVersioned:Teat&oldid=1107850923] | ||
| comment: While many lay sources treat nipple and teat as synonyms, mammalogists do not. {xref="https://orcid.org/0000-0002-1572-1316"} | ||
| is_a: UBERON:0000475 ! organism subdivision | ||
| relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 | ||
| property_value: editor_note "Taxon restriction should be added on this term when possible." xsd:string | ||
| property_value: seeAlso https://github.com/obophenotype/uberon/issues/2353 xsd:string | ||
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| [Term] | ||
| id: UBERON:8440079 | ||
| name: teat skin | ||
| def: "The skin that is part of the teat." [https://orcid.org/0000-0001-7258-9596] | ||
| intersection_of: UBERON:0001003 ! skin epidermis | ||
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There was a problem hiding this comment. general red flag here: label, text def, and logical def should be inconcordance in general in uberon, skin = epidermis + dermis, so we shouldn't conflate the two - even if there are some zones where dermis is lacking. Also I don't think we can address this issue coherently until we resolve #1873. If teat/nipple is a projection of the skin, as proposed there, then teat skin = teat! We really need clear boundaries defined for all terms |
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| intersection_of: part_of UBERON:8440078 ! teat | ||
| relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 | ||
| property_value: seeAlso https://github.com/obophenotype/uberon/issues/2353 xsd:string | ||
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| [Term] | ||
| id: UBERON:8450001 | ||
| name: egg follicle | ||
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Is that all we can say? No part of?
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oh defs not, I 100% want a link to nipple and from what I understand from the discussion, teat is a homologous to nipple - hence the above asking if its historical or serial. As for part_of -> I'm following nipple which does not have any