Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add riken samples, tweak css to fit #72

Merged
merged 2 commits into from
Oct 27, 2024
Merged

Add riken samples, tweak css to fit #72

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
8ce355f
Add riken samples, tweak css to fit
will-moore Oct 26, 2024
dcf104e
use main branch url
will-moore Oct 26, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions ome2024-ngff-challenge/src/Main.svelte
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -444,9 +444,9 @@

.sources {
display: grid;
grid-template-columns: repeat(auto-fill, minmax(190px, 1fr));
grid-template-columns: repeat(auto-fill, minmax(180px, 1fr));
gap: 5px;
max-width: 1200px;
max-width: 1330px;
margin: 0 auto;
}
.filters {
Expand Down
1 change: 1 addition & 0 deletions ome2024-ngff-challenge/src/util.js
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,7 @@ let faviconDomains = {
Göttingen: "https://nfdi4bioimage.de/",
Jülich: "https://nfdi4bioimage.de/",
NFDI4BIOIMAGE: "https://nfdi4bioimage.de/",
RIKEN: "https://www.riken.jp/",
};

export function getSourceIcon(source) {
Expand Down
2 changes: 2 additions & 0 deletions samples/ngff_samples.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,3 +11,5 @@ Webknossos,https://raw.githubusercontent.com/ome/ome2024-ngff-challenge/main/sam
Crick,https://raw.githubusercontent.com/ome/ome2024-ngff-challenge/main/samples/crick.csv

NFDI4BIOIMAGE,https://raw.githubusercontent.com/ome/ome2024-ngff-challenge/main/samples/n4bi.csv

RIKEN, https://raw.githubusercontent.com/ome/ome2024-ngff-challenge/main/samples/riken_samples.csv
12 changes: 12 additions & 0 deletions samples/riken_samples.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
url,written,written_human_readable,shape,shards,chunks,dimension_names,license,name,description,organismId,fbbiId
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/038d16f4-af14-47b0-a70d-f6349f00b046.zarr,4930489986,4.59 GB,"1,1,520,2160,2560","1,1,520,2160,2560","1,1,1,540,640","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,48-Susaki-MouseBrainCUBIC/Fig3A_R26-pCAG-nuc-3xmKate2,Light-sheet fluorescence microscopy (LSFM) images of R26-pCAG-nuc-3 x mKate2 mouse brain,NCBI:txid10090,obo:FBbi_00000251
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/27f8e9c0-e258-4dd2-ab1b-d2156f9b46e3.zarr,6307886496,5.87 GB,"1,1,709,2160,2560","1,1,709,2160,2560","1,1,1,540,640","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,48-Susaki-MouseBrainCUBIC/Fig3C_H2B-mCherry,Light-sheet fluorescence microscopy (LSFM) images of R26-H2B-mCherry mouse brain,NCBI:txid10090,obo:FBbi_00000251
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/2a942ef9-fb53-4cf4-b142-6c02791acb86.zarr,167121046,159.38 MB,"361,1,1,256,1024","361,1,1,256,1024","1,1,1,256,1024","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,163-Wang-MitochondrialDyn/Fig5AC_Mitochondrial_MitoPB,Time-lapse STED imaging of mitochondrial dynamics in MitoPB Yellow-labeled cells,NCBI:txid9606,obo:FBbi_00000334
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/2b9f8ab8-5e53-434e-bb08-89e54c232ad8.zarr,3926923,3.75 MB,"1,1,1,1538,2048","1,1,1,1538,2048","1,1,1,1538,1024","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,141-Sato-CellMorphology/Fig3a_FIB-SEM_synapse,Single FIB-SEM images of spine synapse in wild-type (C57BL/6J) mice,NCBI:txid10090,obo:FBbi_00050000
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/396ac197-aeed-4121-b590-d746b5b27862.zarr,28390655742,26.44 GB,"200,1,1,9180,13264","200,1,1,9180,13264","1,1,1,2295,3316","t,c,z,y,x",https://creativecommons.org/licenses/by-nc/4.0/,199-Ichimura-MulticellularDyn/Fig4_HeLaYC360_5spf,Fluoresence imaging of FRET-based calcium ion imaging in HeLa cells.,NCBI:txid9606,obo:FBbi_00000246
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/6b003c94-9e1d-4fe2-99e0-628e5be2321d.zarr,3574991399,3.33 GB,"1,1,696,2160,2560","1,1,696,2160,2560","1,1,1,540,640","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,48-Susaki-MouseBrainCUBIC/Fig3E_Thy1-YFP-H,Light-sheet fluorescence microscopy (LSFM) images of Thy1-YFP-H transgenic mouse brain,NCBI:txid10090,obo:FBbi_00000251
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/71df7f94-2661-4438-9a6d-3b317cd23409.zarr,163383808,155.81 MB,"1,3,58,844,844","1,3,58,844,844","1,1,1,844,844","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,170-Tsutsui-HookBM/Airyscan_hook_BM,High-resolution three-dimensional images of the hook basement membrane in mouse dorsal skin.,NCBI:txid10090,obo:FBbi_00000251
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/8b0e0f7f-0ed4-487a-b8d2-cd6744d43c3e.zarr,12012724346,11.19 GB,"271,2,43,855,862","271,2,43,855,862","1,1,1,855,862","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,98-Morita-ToothEpiCellDyn/fig2ab_trajectory_epithelialcell,Time-lapse images of tracking the epithelial cells during tooth morphogenesis,NCBI:txid10090,obo:FBbi_00000251
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/ed70ed19-eec3-439b-b8a0-f38edc1c46a4.zarr,5902279335,5.50 GB,"1,1,665,2160,2560","1,1,665,2160,2560","1,1,1,540,640","t,c,z,y,x",https://creativecommons.org/licenses/by/4.0/,48-Susaki-MouseBrainCUBIC/Fig3D_H2B-EGFP,Light-sheet fluorescence microscopy (LSFM) images of R26-H2B-EGFP mouse brain,NCBI:txid10090,obo:FBbi_00000251
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/f4331e06-dd38-46fd-ab2c-c53bf070db7f.zarr,2683755276,2.50 GB,"180,1,66,600,600","180,1,66,600,600","1,1,1,600,600","t,c,z,y,x",https://creativecommons.org/licenses/by-nc/4.0/,2-Kyoda-WormEmbryoRNAi/wt_N2_030303_01,3D time-lapse microscopy images about nuclear division dynamics in wild-type embryo,NCBI:txid6239,obo:FBbi_00000245
https://radosgw.public.os.wwu.de/n4bi-wp1/challenge/riken/0620364b-b91a-44b6-a290-24fd84d38264.zarr,55844661,53.26 MB,"1,3,1,9180,13264","1,3,1,9180,13264","1,1,1,2295,3316","t,c,z,y,x",https://creativecommons.org/licenses/by-nc/4.0/,199-Ichimura-MulticellularDyn/Fig2_BrainSliceRGB,AMATERAS imaging of mouse brain slice.,NCBI:txid10090,obo:FBbi_00000246