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Update README page with link to viewer and update validator links #78

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Oct 28, 2024
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Update README page with link to viewer and update validator links #78

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Update README page with link to samples viewer and update validator l…
will-moore Oct 28, 2024
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will-moore Oct 28, 2024
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28 changes: 14 additions & 14 deletions README.md
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Expand Up @@ -25,7 +25,11 @@
<!-- prettier-ignore-end -->

Project planning and material repository for the 2024 challenge to generate 1 PB
of OME-Zarr data
of OME-Zarr data.

**UPDATE (20th October 2024)**: The data converted for the challenge can now be
browsed and searched at
[https://ome.github.io/ome2024-ngff-challenge/](https://ome.github.io/ome2024-ngff-challenge/).

## Challenge overview

Expand Down Expand Up @@ -58,30 +62,26 @@ $ mc ls -r uk1anon/idr/share/ome2024-ngff-challenge/0.0.5/6001240.zarr/
[2024-08-01 14:24:28 CEST] 2.7KiB STANDARD zarr.json
```

The dataset (from idr0062) can be inspected using a development version of the
OME-NGFF Validator available at
<https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/0.0.5/6001240.zarr>

Other samples:

- [4496763.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/4496763.zarr)
- [4496763.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/4496763.zarr)
Shape `4,25,2048,2048`, Size `589.81 MB`, from idr0047.
- [9822152.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0083/9822152.zarr)
- [9822152.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0083/9822152.zarr)
Shape `1,1,1,93184,144384`, Size `21.57 GB`, from idr0083.
- [9846151.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0048/9846151.zarr)
- [9846151.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0048/9846151.zarr)
Shape `1,3,1402,5192,2947`, Size `66.04 GB`, from idr0048.
- [Week9_090907.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0035/Week9_090907.zarr)
- [Week9_090907.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0035/Week9_090907.zarr)
plate from idr0035.
- [l4_sample/color](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://data-humerus.webknossos.org/data/zarr3_experimental/scalable_minds/l4_sample/color)
- [l4_sample/color](https://ome.github.io/ome-ngff-validator/?source=https://data-humerus.webknossos.org/data/zarr3_experimental/scalable_minds/l4_sample/color)
from WebKnossos.
- Plates from idr0090:
[190129.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0090/190129.zarr)
[190129.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0090/190129.zarr)
Size `1.0 TB`,
[190206.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0090/190206.zarr)
[190206.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0090/190206.zarr)
Size `485 GB`,
[190211.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0090/190211.zarr)
[190211.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0090/190211.zarr)
Size `704 GB`.
- [76-45.zarr](https://deploy-preview-36--ome-ngff-validator.netlify.app/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0010/76-45.zarr)
- [76-45.zarr](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/idr/share/ome2024-ngff-challenge/idr0010/76-45.zarr)
plate from idr0010

<details><summary>Expand for more details on creation of these samples</summary>
Expand Down