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Disulfides

Disulfides #18

Triggered via pull request January 16, 2025 05:08
Status Success
Total duration 2m 13s
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gh-ci.yaml

on: pull_request
Matrix: main-tests
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6 errors and 21 warnings
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L318
Argument of type "filter[Molecule]" cannot be assigned to parameter "molecules" of type "MoleculeLike | list[MoleculeLike]" in function "from_molecules"   Type "filter[Molecule]" is not assignable to type "MoleculeLike | list[MoleculeLike]"     "filter[Molecule]" is not assignable to "Molecule"     "filter[Molecule]" is not assignable to "FrozenMolecule"     "filter[Molecule]" is not assignable to "_SimpleMolecule"     "filter[Molecule]" is not assignable to "list[MoleculeLike]" (reportArgumentType)
main-tests (ubuntu-latest, 3.11)
1 error
main-tests (ubuntu-latest, 3.11)
Process completed with exit code 1.
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L318
Argument of type "filter[Molecule]" cannot be assigned to parameter "molecules" of type "MoleculeLike | list[MoleculeLike]" in function "from_molecules"   Type "filter[Molecule]" is not assignable to type "MoleculeLike | list[MoleculeLike]"     "filter[Molecule]" is not assignable to "Molecule"     "filter[Molecule]" is not assignable to "FrozenMolecule"     "filter[Molecule]" is not assignable to "_SimpleMolecule"     "filter[Molecule]" is not assignable to "list[MoleculeLike]" (reportArgumentType)
main-tests (macos-latest, 3.11)
1 error
main-tests (macos-latest, 3.11)
Process completed with exit code 1.
main-tests (ubuntu-latest, 3.11)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L74
Type of "are_isomorphic" is partially unknown   Type of "are_isomorphic" is "(mol1: FrozenMolecule | _SimpleMolecule | Graph[Unknown], mol2: FrozenMolecule | _SimpleMolecule | Graph[Unknown], return_atom_map: bool = False, aromatic_matching: bool = True, formal_charge_matching: bool = True, bond_order_matching: bool = True, atom_stereochemistry_matching: bool = True, bond_stereochemistry_matching: bool = True, strip_pyrimidal_n_atom_stereo: bool = True, toolkit_registry: ToolkitRegistry | ToolkitWrapper = GLOBAL_TOOLKIT_REGISTRY) -> tuple[bool, dict[int, int] | None]" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "atom" is unknown (reportUnknownVariableType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "pdbatom" is unknown (reportUnknownVariableType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "atoms" is partially unknown   Type of "atoms" is "list[Unknown]" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L88
Argument type is partially unknown   Argument corresponds to parameter "iter1" in function "__new__"   Argument type is "list[Unknown]" (reportUnknownArgumentType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "atoms" is partially unknown   Type of "atoms" is "list[Unknown]" (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L88
Argument type is partially unknown   Argument corresponds to parameter "iter2" in function "__new__"   Argument type is "list[Unknown]" (reportUnknownArgumentType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L89
Type of "metadata" is unknown (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L89
Type of "update" is unknown (reportUnknownMemberType)
main-tests (ubuntu-latest, 3.11): openff/pablo/_pdb.py#L89
Type of "metadata" is unknown (reportUnknownMemberType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L74
Type of "are_isomorphic" is partially unknown   Type of "are_isomorphic" is "(mol1: FrozenMolecule | _SimpleMolecule | Graph[Unknown], mol2: FrozenMolecule | _SimpleMolecule | Graph[Unknown], return_atom_map: bool = False, aromatic_matching: bool = True, formal_charge_matching: bool = True, bond_order_matching: bool = True, atom_stereochemistry_matching: bool = True, bond_stereochemistry_matching: bool = True, strip_pyrimidal_n_atom_stereo: bool = True, toolkit_registry: ToolkitRegistry | ToolkitWrapper = GLOBAL_TOOLKIT_REGISTRY) -> tuple[bool, dict[int, int] | None]" (reportUnknownMemberType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "atom" is unknown (reportUnknownVariableType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "pdbatom" is unknown (reportUnknownVariableType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "atoms" is partially unknown   Type of "atoms" is "list[Unknown]" (reportUnknownMemberType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L88
Argument type is partially unknown   Argument corresponds to parameter "iter1" in function "__new__"   Argument type is "list[Unknown]" (reportUnknownArgumentType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L88
Type of "atoms" is partially unknown   Type of "atoms" is "list[Unknown]" (reportUnknownMemberType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L88
Argument type is partially unknown   Argument corresponds to parameter "iter2" in function "__new__"   Argument type is "list[Unknown]" (reportUnknownArgumentType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L89
Type of "metadata" is unknown (reportUnknownMemberType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L89
Type of "update" is unknown (reportUnknownMemberType)
main-tests (macos-latest, 3.11): openff/pablo/_pdb.py#L89
Type of "metadata" is unknown (reportUnknownMemberType)