Repositories list

• n5-spark

  Public
  Spark-driven processing utilities for N5 datasets.

  Java

  •

  BSD 2-Clause "Simplified" License

  •7•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• ShroffCelegansModels.jl

  Public
  Julia

  •

  MIT License

  •0•2•0•38•Updated Jan 15, 2025Jan 15, 2025

• nextflow-modules

  Public
  Nextflow modules for use with nf-core tooling

  Nextflow

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• G4_Display_Tools

  Public
  Collection of tools for the G4 LED arena displays.

  MATLAB

  •

  Creative Commons Attribution 4.0 International

  •3•2•10•0•Updated Jan 14, 2025Jan 14, 2025

• neuronbridge-precompute

  Public
  Utilities for indexing and transferring of NeuronBridge-related files

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• dis-utilities

  Public
  Utilities for Data and Information Services

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•11•1•Updated Jan 14, 2025Jan 14, 2025

• neuronbridge

  Public
  EM/LM neuron search

  neuroscienceneuroimagingneurons+ 3drosophilajaneliaaws

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•9•Updated Jan 14, 2025Jan 14, 2025

• containers

  Public
  Containers for workflow plugins

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• neuronbridge-services

  Public
  AWS Services for NeuronBridge

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•18•Updated Jan 13, 2025Jan 13, 2025

• pydantic-ome-ngff

  Public
  Pydantic models for OME-NGFF

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•22•6•1•Updated Jan 13, 2025Jan 13, 2025

• hortacloud

  Public
  HortaCloud - 3D annotation platform for large microscopy data

  awsneurosciencescientific-computing+ 3neuronsannotation-tooljanelia

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•10•47•0•Updated Jan 11, 2025Jan 11, 2025

• EM_recon_pipeline

  Public
  Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•3•Updated Jan 11, 2025Jan 11, 2025

• workstation

  Public
  Janelia Workstation

  neurosciencescientific-computingneuroimaging+ 4volume-renderingconnectomicsjaneliaconfocal-microscopy

  Java

  •

  Other

  •11•24•0•12•Updated Jan 10, 2025Jan 10, 2025

• jacs-storage

  Public
  JADE file storage services

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•1•Updated Jan 10, 2025Jan 10, 2025

• jacs-cm

  Public
  JACS Configuration Management

  janeliajanelia-workstationmouselight+ 4dockerdevopsdocker-swarmswarm

  XSLT

  •

  Other

  •3•8•17•2•Updated Jan 10, 2025Jan 10, 2025

• hortacloud-utilities

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• colormipsearch

  Public
  Distributed Color Depth MIP Search

  neurosciencesearch-algorithmneuron

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•2•Updated Jan 8, 2025Jan 8, 2025

• jacs-messaging

  Public
  Provides rabbitmq wrappers and broker base implementation for Neuron shared workspaces in Horta/LVV

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• jacs-model

  Public
  JACS Domain Model and DAOs

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

• jacs-compute

  Public
  JAnelia Compute Services (JACS)

  distributed-computingneuroimagingcluster-computing

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

• videoAnnotation_backend

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• videoAnnotation

  Public
  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• RubinFlyDiscoSettings

  Public
  Rubin Lab settings folder for FlyDiscoAnalysis

  Shell

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• hortacloud-website

  Public
  Documentation website for HortaCloud

  neurosciencejaneliahortacloud

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•3•Updated Jan 7, 2025Jan 7, 2025

• neuronbridge-data

  Public
  Versioned NeuronBridge data files deployed to S3 buckets

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• JaneliaDataStandards

  Public
  A pilot experiment to dissminate information about Janelia's biomaging data formats.

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •2•11•2•4•Updated Dec 24, 2024Dec 24, 2024

• bigstream

  Public
  Tools for distributed alignment of massive images

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •21•78•11•2•Updated Dec 24, 2024Dec 24, 2024

• SongExplorer

  Public
  deep learning for acoustic signals

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•24•5•1•Updated Dec 23, 2024Dec 23, 2024

• nnmf

  Public
  Non-negative matrix factorization of fluorescent time series

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• ossi-website

  Public
  Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

  Astro

  •

  BSD 3-Clause "New" or "Revised" License

  •17•1•16•2•Updated Dec 19, 2024Dec 19, 2024