Repositories list

• Vocabulary-v5.0

  Public
  Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

  PLpgSQL

  •

  The Unlicense

  •75•225•224•11•Updated Jan 11, 2025Jan 11, 2025

• Arachne

  Public
  Arachne Data Node web application

  TypeScript

  •

  Apache License 2.0

  •1•1•11•0•Updated Jan 11, 2025Jan 11, 2025

• context

  Public
  A python library to create knowledge graphs for context-aware prediction modeling and more.

  Python

  •0•0•1•0•Updated Jan 11, 2025Jan 11, 2025

• Characterization

  Public
  Various types of characterizations of a target and outcome cohort.

  R

  •5•3•5•4•Updated Jan 10, 2025Jan 10, 2025

• ClinicalCharacteristics

  Public
  [under development] table shell approach to OMOP characterization

  R

  •

  Apache License 2.0

  •1•0•11•0•Updated Jan 10, 2025Jan 10, 2025

• ProtocolGenerator

  Public
  Converts a Strategus JSON specification into a human readable html document

  R

  •0•0•2•0•Updated Jan 10, 2025Jan 10, 2025

• CohortDiagnostics

  Public
  An R package for performing various cohort diagnostics.

  hades

  R

  •50•42•31•2•Updated Jan 10, 2025Jan 10, 2025

• AresIndexer

  Public
  R package that creates the index and relevant files for an Ares deployment.

  R

  •

  Apache License 2.0

  •5•1•17•1•Updated Jan 10, 2025Jan 10, 2025

• OhdsiReportGenerator

  Public
  Code to extract data from the OHDSI results structure and generate plots, presentations and reports

  R

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• circe-be

  Public
  CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

  cohort-definitions

  Java

  •

  Apache License 2.0

  •13•9•7•7•Updated Jan 10, 2025Jan 10, 2025

• PatientLevelPrediction

  Public
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

  hades

  HTML

  •90•189•37•3•Updated Jan 10, 2025Jan 10, 2025

• Cyclops

  Public
  Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

  hades

  C++

  •33•39•19•1•Updated Jan 10, 2025Jan 10, 2025

• OmopSketch

  Public
  R

  •

  Apache License 2.0

  •0•1•10•3•Updated Jan 10, 2025Jan 10, 2025

• ETL-LambdaBuilder

  Public
  CDM Builder leveraging AWS Lambda

  C#

  •

  Apache License 2.0

  •15•15•1•2•Updated Jan 10, 2025Jan 10, 2025

• dbt-synthea

  Public
  [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

  Python

  •

  Apache License 2.0

  •8•20•19•2•Updated Jan 10, 2025Jan 10, 2025

• CommunityDashboard

  Public
  Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's

  TypeScript

  •

  Apache License 2.0

  •1•6•11•0•Updated Jan 9, 2025Jan 9, 2025

• TAB

  Public
  OHDSI Open Source Technical Advisory Board

  2•4•3•0•Updated Jan 9, 2025Jan 9, 2025

• DatabaseConnector

  Public
  An R package for connecting to databases using JDBC.

  hades

  R

  •83•55•30•2•Updated Jan 9, 2025Jan 9, 2025

• Ares

  Public
  A Research Exploration System

  Vue

  •

  Apache License 2.0

  •7•12•34•2•Updated Jan 8, 2025Jan 8, 2025

• WebAPI

  Public
  OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

  Java

  •

  Apache License 2.0

  •168•133•129•22•Updated Jan 8, 2025Jan 8, 2025

• SelfControlledCohort

  Public
  An R package for performing self-controlled cohort analyses, a method to estimate risk by comparing time exposed with time unexposed among the exposed cohort.

  hades

  R

  •4•8•1•1•Updated Jan 7, 2025Jan 7, 2025

• ResultModelManager

  Public
  RMM is an R package designed to handle common ohdsi results data management functions by providing a common API for data model migrations and definitions

  R

  •

  Apache License 2.0

  •3•4•11•0•Updated Jan 7, 2025Jan 7, 2025

• CommonDataModel

  Public
  Definition and DDLs for the OMOP Common Data Model (CDM)

  HTML

  •458•907•79•12•Updated Jan 7, 2025Jan 7, 2025

• Strategus

  Public
  An R package for coordinating and executing analytics using HADES modules

  R

  •11•6•19•5•Updated Jan 3, 2025Jan 3, 2025

• drat

  Public
  drat repository for OHDSI R packages

  7•5•0•0•Updated Dec 25, 2024Dec 25, 2024

• DataQualityDashboard

  Public
  A tool to help improve data quality standards in observational data science.

  data-quality

  JavaScript

  •

  Apache License 2.0

  •97•150•52•6•Updated Dec 25, 2024Dec 25, 2024

• InspectOMOP

  Public
  InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databases following the OHDSI OMOP Common Data Model(CDM) standard v>=5.

  Python

  •

  GNU Affero General Public License v3.0

  •2•14•0•1•Updated Dec 24, 2024Dec 24, 2024

• CohortConstructor

  Public
  R

  •

  Apache License 2.0

  •0•1•38•3•Updated Dec 23, 2024Dec 23, 2024

• ETL-Synthea

  Public
  A package supporting the conversion from Synthea CSV to OMOP CDM

  etl

  R

  •74•100•3•0•Updated Dec 20, 2024Dec 20, 2024

• gaiaDB

  Public
  A staging database and collection of transformation recipes for public place-based datasets

  Python

  •0•1•37•0•Updated Dec 20, 2024Dec 20, 2024