ENH: pcds-5.9.0

envs/pcds/conda-packages.txt

@@ -8,7 +8,6 @@ atlassian-python-api>=3.41.14
 black>=24.8.0
 blark>=0.8.1
 bluesky-live>=0.0.8
-bluesky-queueserver>=0.0.18
 bluesky-widgets>=0.0.14
 bokeh>=1.0.1
 botorch>=0.4.0
@@ -17,6 +16,7 @@ coloredlogs>=15.0.1
 conda-pack>=0.8.0
 conda-smithy>=3.38.0
 cookiecutter>=2.1.1
+coverage>=7.6.1
 cython>=0.29.34
 datashader>=0.14.4
 elog>=1.2.3
@@ -25,9 +25,9 @@ flake8>=7.1.1
 flask>=3.0.3
 fzf>=0.54.3
 gdb>=15.1
-gh>=2.54.0
+gh>=2.55.0
+ghapi>=1.0.5
 gpytorch>=1.4.2
-grpcio-tools>=1.51.1
 h5py>=3.3.0
 happi>=2.5.0
 hklpy>=1.1.1
@@ -39,11 +39,11 @@ jupyter>=1.0.0
 krtc>=0.3.0
 lightpath>=1.0.4
 line_profiler>=4.1.1
-lucid>=0.10.3
+lucid>=0.11.0
 lxml>=4.8.0
 memray>=1.13.4
 mysqlclient>=2.0.3
-nabs>=1.5.4
+nabs>=1.5.5
 numpy>=1.14,<2.0.0
 opencv>=4.5.1
 openssl>=3.3.1
@@ -52,7 +52,7 @@ panel>=0.14.4
 papermill>=2.3.4
 paramiko>=3.1.0
 pcaspy>=0.7.3
-pcdscalc>=0.5.1
+pcdscalc>=0.6.0
 pcdsdaq>=2.4.3
 pcdsdevices>=8.4.0
 pcdsutils>=0.14.1
@@ -64,7 +64,7 @@ pmpsdb_client>=1.2.0
 pre-commit>=3.8.0
 psdaq-control-minimal>=3.3.38
 psdm_qs_cli>=0.3.7
-pswalker>=1.0.8
+pswalker>=1.0.10
 pyaudio>=0.2.13
 pyca>=3.2.1
 pycln>=2.4.0
@@ -90,8 +90,11 @@ scikit-image>=0.19.3
 scikit-learn>=1.2.2
 scipy>=1.10.1
 seaborn>=0.12.2
+shapely
 shellcheck>=0.10.0
 simplejson>=3.19.1
+sphinx>=7
+sphinx_rtd_theme>=2.0.0
 spyder-kernels>=2.4.3
 suitcase-csv>=0.3.0
 suitcase-json-metadata>=0.2.1
@@ -114,19 +117,12 @@ pyqt=5.15.9
 pyqtwebengine=5.15.9
 # conda+pip regressive pins
 # avoids bluesky v1.11.0 which breaks nabs
-bluesky=1.10.0
-# coverage 7.4.2 does not have a py39 build on conda
-coverage=7.4.1
-# avoids pre-releases of v2
-databroker<2.0.0
+bluesky-base=1.10.0
 # ipython changes make scientists upset and can break experiments
 ipython=8.4.0
+# most of the ecosystem is not ready for numpy 2.0
+numpy=1.26.4
 # avoids ophyd v1.8.0 which I have not had time to test
 ophyd=1.7.0
-# force a newer perl build (temporary pin, can remove later if you read this line)
-perl=5.32.1=7_hd590300_perl5
 # pin for gui interface stability
 qtpy=2.1.0
-# sphinx 7.0.0 incompatible with rtd theme at 1.2.0, temporarily pin both
-sphinx<7
-sphinx_rtd_theme=1.2.0

envs/pcds/keep-updated.txt

@@ -37,7 +37,11 @@ whatrecord
 # Collaboration packages
 # - Packages developed by e.g. NSLS-II, APS
 # - Frequently relevant features/fixes
+bloptools
 # bluesky (need to fix nabs and test v1.11.0)
+# bluesky-live
+# blueksy-queueserver
+# bluesky-widgets
 caproto
 hklpy
 # ophyd (need to test v1.8.0)
@@ -53,12 +57,14 @@ atlassian-python-api
 black
 conda-pack
 conda-smithy
-# coverage (v7.4.2 missing conda build, skip for now)
+coverage
 flake8
 flask
 fzf
 gdb
 gh
+ghapi
+grpcio-tools
 isort
 line_profiler
 memray
@@ -72,9 +78,9 @@ pytest-repeat
 pytest-xdist
 pyupgrade
 shellcheck
-# sphinx and friends updates temporarily disabled due to incompatibilities at v7.0.0
+# sphinx temporarily disabled due to incompatibilities at v8.0.0
 # sphinx
-# sphinx_rtd_theme
+sphinx_rtd_theme
 
 # Security
 openssl

envs/pcds/pip-packages.txt

@@ -1,4 +1,7 @@
 # pypi as new as possible
+bluesky-queueserver>=0.0.18
+bloptools>=0.7.0
+grpcio-tools>=1.62.2
 laserbeamsize
 p4p
 pip-audit
@@ -7,18 +10,13 @@ python-vxi11
 slac-alarm-manager>=1.3.0
 tc-release>=0.2.6
 # conda+pip regressive pins
-# coverage 7.4.2 does not have a py39 build on conda
-coverage==7.4.1
 # avoids bluesky v1.11.0 which breaks nabs
 bluesky==1.10.0
-# avoids pre-releases of v2
-databroker<2.0.0
 # ipython changes make scientists upset and can break experiments
 ipython==8.4.0
+# most of the ecosystem is not ready for numpy 2.0
+numpy==1.26.4
 # avoids ophyd v1.8.0 which I have not had time to test
 ophyd==1.7.0
 # pin for gui interface stability
 qtpy==2.1.0
-# sphinx 7.0.0 incompatible with rtd theme at 1.2.0, temporarily pin both
-sphinx<7
-sphinx_rtd_theme==1.2.0

envs/pcds/security-packages.txt

@@ -1,19 +1,4 @@
 # Extra dependencies that must be updated to handle a CVE
 # Apply this even in the incr environment
 # This file can be periodically cleared after an env release
-aiohttp>=3.9.2
-dnspython>=2.6.1
-cryptography>=42.0.0
-fastapi>=0.109.1
-gitpython>=3.1.41
-idna>=3.7
-jinja2>=3.1.3
-jupyter-lsp>=2.2.2
-jupyterlab>=4.0.11
-notebook>=7.0.7
-orjson>=3.9.15
-pillow>=10.3.0
-pymongo>=4.6.3
-pyopenssl>=24
-python-multipart>=0.0.7
-starlette>=0.36.2
+aiohttp>=3.10.2