deploy: phasorpy/phasorpy@1de0a79

docs/main/_sources/phasor_approach.rst.txt

@@ -195,6 +195,11 @@ approach to analyze fluorescence time-resolved or spectral images:
   raw TCSPC-FLIM data. The software is written in Python and distributed
   under the BSD-3-Clause license.
 
+- `GSLab <https://figshare.com/articles/software/GSLab_Open-Source_Platform_for_Advanced_Phasor_Analysis_in_Fluorescence_Microscopy/27921966>`_
+  is open-source platform for advanced phasor analysis in fluorescence
+  microscopy written in MATLAB by Alexander Vallmitjana, released under
+  the CC BY 4.0 license.
+
 - `AlliGator <https://alligator-distribution.readthedocs.io>`_
   is a free, closed-source software for fluorescence lifetime image data
   analysis using the phasor approach and standard nonlinear fitting.

docs/main/_sources/sg_execution_times.rst.txt

@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:35.654** total execution time for 11 files **from all galleries**:
+**00:52.432** total execution time for 11 files **from all galleries**:
 
 .. container::
 
@@ -33,35 +33,35 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_tutorials_phasorpy_introduction.py` (``../tutorials/phasorpy_introduction.py``)
-     - 00:12.317
+     - 00:29.234
      - 0.0
    * - :ref:`sphx_glr_tutorials_benchmarks_phasorpy_phasor_from_signal.py` (``../tutorials/benchmarks/phasorpy_phasor_from_signal.py``)
-     - 00:07.720
+     - 00:07.676
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_components.py` (``../tutorials/api/phasorpy_components.py``)
-     - 00:05.569
+     - 00:05.606
      - 0.0
    * - :ref:`sphx_glr_tutorials_phasorpy_lfd_workshop.py` (``../tutorials/phasorpy_lfd_workshop.py``)
-     - 00:04.958
+     - 00:04.917
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_fret.py` (``../tutorials/api/phasorpy_fret.py``)
-     - 00:01.812
+     - 00:01.747
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_multi-harmonic.py` (``../tutorials/api/phasorpy_multi-harmonic.py``)
-     - 00:01.017
+     - 00:01.005
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_phasorplot.py` (``../tutorials/api/phasorpy_phasorplot.py``)
-     - 00:00.740
+     - 00:00.737
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_cursors.py` (``../tutorials/api/phasorpy_cursors.py``)
-     - 00:00.566
+     - 00:00.575
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_phasor_from_lifetime.py` (``../tutorials/api/phasorpy_phasor_from_lifetime.py``)
-     - 00:00.476
+     - 00:00.473
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_lifetime_to_signal.py` (``../tutorials/api/phasorpy_lifetime_to_signal.py``)
-     - 00:00.282
+     - 00:00.268
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_pca.py` (``../tutorials/api/phasorpy_pca.py``)
-     - 00:00.197
+     - 00:00.192
      - 0.0

docs/main/_sources/tutorials/api/phasorpy_components.rst.txt

@@ -604,42 +604,42 @@ of components, A vs C and B vs C:
      </style>
 
      <div class="animation">
-       <img id="_anim_img6c23a2610c084e1785596d1edfed12f7">
+       <img id="_anim_img517923591a1840d58a24c2e6d8b1ce7d">
        <div class="anim-controls">
-         <input id="_anim_slider6c23a2610c084e1785596d1edfed12f7" type="range" class="anim-slider"
+         <input id="_anim_slider517923591a1840d58a24c2e6d8b1ce7d" type="range" class="anim-slider"
                 name="points" min="0" max="1" step="1" value="0"
-                oninput="anim6c23a2610c084e1785596d1edfed12f7.set_frame(parseInt(this.value));">
+                oninput="anim517923591a1840d58a24c2e6d8b1ce7d.set_frame(parseInt(this.value));">
          <div class="anim-buttons">
-           <button title="Decrease speed" aria-label="Decrease speed" onclick="anim6c23a2610c084e1785596d1edfed12f7.slower()">
+           <button title="Decrease speed" aria-label="Decrease speed" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.slower()">
                <i class="fa fa-minus"></i></button>
-           <button title="First frame" aria-label="First frame" onclick="anim6c23a2610c084e1785596d1edfed12f7.first_frame()">
+           <button title="First frame" aria-label="First frame" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.first_frame()">
              <i class="fa fa-fast-backward"></i></button>
-           <button title="Previous frame" aria-label="Previous frame" onclick="anim6c23a2610c084e1785596d1edfed12f7.previous_frame()">
+           <button title="Previous frame" aria-label="Previous frame" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.previous_frame()">
                <i class="fa fa-step-backward"></i></button>
-           <button title="Play backwards" aria-label="Play backwards" onclick="anim6c23a2610c084e1785596d1edfed12f7.reverse_animation()">
+           <button title="Play backwards" aria-label="Play backwards" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.reverse_animation()">
                <i class="fa fa-play fa-flip-horizontal"></i></button>
-           <button title="Pause" aria-label="Pause" onclick="anim6c23a2610c084e1785596d1edfed12f7.pause_animation()">
+           <button title="Pause" aria-label="Pause" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.pause_animation()">
                <i class="fa fa-pause"></i></button>
-           <button title="Play" aria-label="Play" onclick="anim6c23a2610c084e1785596d1edfed12f7.play_animation()">
+           <button title="Play" aria-label="Play" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.play_animation()">
                <i class="fa fa-play"></i></button>
-           <button title="Next frame" aria-label="Next frame" onclick="anim6c23a2610c084e1785596d1edfed12f7.next_frame()">
+           <button title="Next frame" aria-label="Next frame" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.next_frame()">
                <i class="fa fa-step-forward"></i></button>
-           <button title="Last frame" aria-label="Last frame" onclick="anim6c23a2610c084e1785596d1edfed12f7.last_frame()">
+           <button title="Last frame" aria-label="Last frame" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.last_frame()">
                <i class="fa fa-fast-forward"></i></button>
-           <button title="Increase speed" aria-label="Increase speed" onclick="anim6c23a2610c084e1785596d1edfed12f7.faster()">
+           <button title="Increase speed" aria-label="Increase speed" onclick="anim517923591a1840d58a24c2e6d8b1ce7d.faster()">
                <i class="fa fa-plus"></i></button>
          </div>
-         <form title="Repetition mode" aria-label="Repetition mode" action="#n" name="_anim_loop_select6c23a2610c084e1785596d1edfed12f7"
+         <form title="Repetition mode" aria-label="Repetition mode" action="#n" name="_anim_loop_select517923591a1840d58a24c2e6d8b1ce7d"
                class="anim-state">
-           <input type="radio" name="state" value="once" id="_anim_radio1_6c23a2610c084e1785596d1edfed12f7"
+           <input type="radio" name="state" value="once" id="_anim_radio1_517923591a1840d58a24c2e6d8b1ce7d"
                   >
-           <label for="_anim_radio1_6c23a2610c084e1785596d1edfed12f7">Once</label>
-           <input type="radio" name="state" value="loop" id="_anim_radio2_6c23a2610c084e1785596d1edfed12f7"
+           <label for="_anim_radio1_517923591a1840d58a24c2e6d8b1ce7d">Once</label>
+           <input type="radio" name="state" value="loop" id="_anim_radio2_517923591a1840d58a24c2e6d8b1ce7d"
                   checked>
-           <label for="_anim_radio2_6c23a2610c084e1785596d1edfed12f7">Loop</label>
-           <input type="radio" name="state" value="reflect" id="_anim_radio3_6c23a2610c084e1785596d1edfed12f7"
+           <label for="_anim_radio2_517923591a1840d58a24c2e6d8b1ce7d">Loop</label>
+           <input type="radio" name="state" value="reflect" id="_anim_radio3_517923591a1840d58a24c2e6d8b1ce7d"
                   >
-           <label for="_anim_radio3_6c23a2610c084e1785596d1edfed12f7">Reflect</label>
+           <label for="_anim_radio3_517923591a1840d58a24c2e6d8b1ce7d">Reflect</label>
          </form>
        </div>
      </div>
@@ -649,9 +649,9 @@ of components, A vs C and B vs C:
        /* Instantiate the Animation class. */
        /* The IDs given should match those used in the template above. */
        (function() {
-         var img_id = "_anim_img6c23a2610c084e1785596d1edfed12f7";
-         var slider_id = "_anim_slider6c23a2610c084e1785596d1edfed12f7";
-         var loop_select_id = "_anim_loop_select6c23a2610c084e1785596d1edfed12f7";
+         var img_id = "_anim_img517923591a1840d58a24c2e6d8b1ce7d";
+         var slider_id = "_anim_slider517923591a1840d58a24c2e6d8b1ce7d";
+         var loop_select_id = "_anim_loop_select517923591a1840d58a24c2e6d8b1ce7d";
          var frames = new Array(20);
 
        frames[0] = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAiQAAAMgCAYAAAATFXnSAAAAOXRFWHRTb2Z0d2FyZQBNYXRwbG90\
@@ -16461,7 +16461,7 @@ of components, A vs C and B vs C:
          /* set a timeout to make sure all the above elements are created before
             the object is initialized. */
          setTimeout(function() {
-             anim6c23a2610c084e1785596d1edfed12f7 = new Animation(frames, img_id, slider_id, 100.0,
+             anim517923591a1840d58a24c2e6d8b1ce7d = new Animation(frames, img_id, slider_id, 100.0,
                                       loop_select_id);
          }, 0);
        })()
@@ -16481,7 +16481,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 5.569 seconds)
+   **Total running time of the script:** (0 minutes 5.606 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_components.py:

docs/main/_sources/tutorials/api/phasorpy_cursors.rst.txt

@@ -363,7 +363,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.566 seconds)
+   **Total running time of the script:** (0 minutes 0.575 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_cursors.py:

docs/main/_sources/tutorials/api/phasorpy_fret.rst.txt

@@ -408,7 +408,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 1.812 seconds)
+   **Total running time of the script:** (0 minutes 1.747 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_fret.py:

docs/main/_sources/tutorials/api/phasorpy_lifetime_to_signal.rst.txt

@@ -380,7 +380,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.282 seconds)
+   **Total running time of the script:** (0 minutes 0.268 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_lifetime_to_signal.py:

docs/main/_sources/tutorials/api/phasorpy_multi-harmonic.rst.txt

@@ -453,7 +453,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 1.017 seconds)
+   **Total running time of the script:** (0 minutes 1.005 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_multi-harmonic.py:

docs/main/_sources/tutorials/api/phasorpy_pca.rst.txt

@@ -255,7 +255,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.197 seconds)
+   **Total running time of the script:** (0 minutes 0.192 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_pca.py:

docs/main/_sources/tutorials/api/phasorpy_phasor_from_lifetime.rst.txt

@@ -361,7 +361,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.476 seconds)
+   **Total running time of the script:** (0 minutes 0.473 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_phasor_from_lifetime.py:

docs/main/_sources/tutorials/api/phasorpy_phasorplot.rst.txt

@@ -493,7 +493,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.740 seconds)
+   **Total running time of the script:** (0 minutes 0.737 seconds)
 
 
 .. _sphx_glr_download_tutorials_api_phasorpy_phasorplot.py:

docs/main/_sources/tutorials/api/sg_execution_times.rst.txt

@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:10.659** total execution time for 8 files **from tutorials/api**:
+**00:10.604** total execution time for 8 files **from tutorials/api**:
 
 .. container::
 
@@ -33,26 +33,26 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_tutorials_api_phasorpy_components.py` (``phasorpy_components.py``)
-     - 00:05.569
+     - 00:05.606
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_fret.py` (``phasorpy_fret.py``)
-     - 00:01.812
+     - 00:01.747
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_multi-harmonic.py` (``phasorpy_multi-harmonic.py``)
-     - 00:01.017
+     - 00:01.005
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_phasorplot.py` (``phasorpy_phasorplot.py``)
-     - 00:00.740
+     - 00:00.737
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_cursors.py` (``phasorpy_cursors.py``)
-     - 00:00.566
+     - 00:00.575
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_phasor_from_lifetime.py` (``phasorpy_phasor_from_lifetime.py``)
-     - 00:00.476
+     - 00:00.473
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_lifetime_to_signal.py` (``phasorpy_lifetime_to_signal.py``)
-     - 00:00.282
+     - 00:00.268
      - 0.0
    * - :ref:`sphx_glr_tutorials_api_phasorpy_pca.py` (``phasorpy_pca.py``)
-     - 00:00.197
+     - 00:00.192
      - 0.0

docs/main/_sources/tutorials/benchmarks/phasorpy_phasor_from_signal.rst.txt

@@ -149,35 +149,35 @@ and number of threads:
     harmonics 1
       axis -1
         not_fft              0.055s   1.00
-        not_fft (2 threads)  0.030s   0.53
-        numpy_fft            0.218s   3.93
-        scipy_fft            0.232s   4.19
+        not_fft (2 threads)  0.029s   0.53
+        numpy_fft            0.213s   3.86
+        scipy_fft            0.230s   4.16
       axis 0
-        not_fft              0.164s   2.97
-        not_fft (2 threads)  0.082s   1.48
-        numpy_fft            0.448s   8.11
+        not_fft              0.165s   2.99
+        not_fft (2 threads)  0.083s   1.50
+        numpy_fft            0.449s   8.13
         scipy_fft            0.344s   6.23
       axis 2
         not_fft              0.055s   1.00
         not_fft (2 threads)  0.029s   0.53
-        numpy_fft            0.216s   3.90
-        scipy_fft            0.231s   4.18
+        numpy_fft            0.214s   3.87
+        scipy_fft            0.229s   4.15
     harmonics 8
       axis -1
-        not_fft              0.488s   8.82
-        not_fft (2 threads)  0.236s   4.26
-        numpy_fft            0.228s   4.12
-        scipy_fft            0.246s   4.45
+        not_fft              0.441s   7.99
+        not_fft (2 threads)  0.230s   4.17
+        numpy_fft            0.224s   4.05
+        scipy_fft            0.238s   4.31
       axis 0
-        not_fft              1.310s  23.69
-        not_fft (2 threads)  0.672s  12.15
-        numpy_fft            0.454s   8.21
-        scipy_fft            0.350s   6.34
+        not_fft              1.322s  23.94
+        not_fft (2 threads)  0.695s  12.58
+        numpy_fft            0.458s   8.29
+        scipy_fft            0.344s   6.24
       axis 2
-        not_fft              0.440s   7.95
+        not_fft              0.442s   8.00
         not_fft (2 threads)  0.230s   4.16
-        numpy_fft            0.229s   4.14
-        scipy_fft            0.241s   4.36
+        numpy_fft            0.224s   4.05
+        scipy_fft            0.235s   4.26
 
 
 
@@ -269,7 +269,7 @@ of harmonics, especially with an optimized FFT function.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 7.720 seconds)
+   **Total running time of the script:** (0 minutes 7.676 seconds)
 
 
 .. _sphx_glr_download_tutorials_benchmarks_phasorpy_phasor_from_signal.py:

docs/main/_sources/tutorials/benchmarks/sg_execution_times.rst.txt

@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:07.720** total execution time for 1 file **from tutorials/benchmarks**:
+**00:07.676** total execution time for 1 file **from tutorials/benchmarks**:
 
 .. container::
 
@@ -33,5 +33,5 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_tutorials_benchmarks_phasorpy_phasor_from_signal.py` (``phasorpy_phasor_from_signal.py``)
-     - 00:07.720
+     - 00:07.676
      - 0.0

docs/main/_sources/tutorials/phasorpy_introduction.rst.txt

@@ -964,11 +964,11 @@ Print information about Python interpreter and installed packages:
 
     Python-3.12.7
     phasorpy-0.3.dev
-    numpy-2.1.3
+    numpy-2.2.0
     tifffile-2024.9.20
     imagecodecs-n/a
     lfdfiles-2024.10.24
-    sdtfile-2024.11.24
+    sdtfile-2024.12.6
     ptufile-2024.11.26
     matplotlib-3.9.3
     scipy-1.14.1
@@ -991,7 +991,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 12.317 seconds)
+   **Total running time of the script:** (0 minutes 29.234 seconds)
 
 
 .. _sphx_glr_download_tutorials_phasorpy_introduction.py:

docs/main/_sources/tutorials/phasorpy_lfd_workshop.rst.txt

@@ -1043,7 +1043,7 @@ mypy: disable-error-code="arg-type"
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 4.958 seconds)
+   **Total running time of the script:** (0 minutes 4.917 seconds)
 
 
 .. _sphx_glr_download_tutorials_phasorpy_lfd_workshop.py:

docs/main/_sources/tutorials/sg_execution_times.rst.txt

@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:17.275** total execution time for 2 files **from tutorials**:
+**00:34.152** total execution time for 2 files **from tutorials**:
 
 .. container::
 
@@ -33,8 +33,8 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_tutorials_phasorpy_introduction.py` (``phasorpy_introduction.py``)
-     - 00:12.317
+     - 00:29.234
      - 0.0
    * - :ref:`sphx_glr_tutorials_phasorpy_lfd_workshop.py` (``phasorpy_lfd_workshop.py``)
-     - 00:04.958
+     - 00:04.917
      - 0.0