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Option to annotate a representative node from each monochromatic contig #500

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@hmusta hmusta commented Oct 2, 2024

Currently this is only implemented for SSHash graphs.

This change stores a bit vector that indicates the breakpoints for monochromatic unitigs in the SSHash graph. This allows us to maintain a lossless annotation while only annotating these breakpoints.

@hmusta hmusta marked this pull request as draft October 8, 2024 09:41
@hmusta hmusta force-pushed the sshash_contig_anno branch from 7c7e139 to 8fddd96 Compare October 8, 2024 09:51
@hmusta hmusta marked this pull request as ready for review October 8, 2024 09:52
@hmusta hmusta force-pushed the sshash_contig_anno branch from 8fddd96 to dbc0cb8 Compare October 8, 2024 10:00
@hmusta hmusta changed the base branch from master to sshash_query_fixes October 8, 2024 20:28
Base automatically changed from sshash_query_fixes to master October 8, 2024 23:04
@hmusta hmusta changed the title Annotating monochromatic contigs for SSHash graphs Option to annotate a representative node from each monochromatic contig Oct 10, 2024
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