initial commit

rkawaguc · Dec 2, 2016 · f039545 · f039545
1 parent b1b8e57
commit f039545
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/sam2bam.sh b/sam2bam.sh
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+#!/bin/bash
+#$ -V
+#$ -cwd
+#S /bin/bash
+#
+samtools view -Sb Aligned.out.sam>temp.bam
+samtools sort temp.bam sorted
+rm temp.bam
+#end_script