fix old format issue #162

	name: CI

	on:
	push:
	branches: [ main, master, nipt ]
	pull_request:
	branches: [ main, master, nipt ]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	test-all:
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v2

	- name: Manually install dependency
	run: sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev && sudo apt-get install -y libharfbuzz-dev && sudo apt-get install -y libfribidi-dev && which pkg-config

	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install dependencies
	run: export MAKE="make -j6" && sudo bash ./scripts/install-dependencies.sh

	- uses: r-lib/actions/check-r-package@v2
	with:
	working-directory: ./QUILT
	args: 'c("--no-manual", "--as-cran")'
	error-on: '"error"'
	upload-snapshots: true

	- name: Test the build
	run: ./scripts/build-and-install.R

	- name: Test README
	run: ./scripts/test-readme.sh

	- name: Test the CLI
	run: ./scripts/test-cli.R

	- name: QUILT1 Example test
	run: ./example/run_example.sh example/QUILT_usage.Md

	- name: HLA test
	run: ./scripts/run_hla_example.sh

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