ChenleiLab_CODEX_HCC

codes for article

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Part 1 discovery cohort pre-processing and cell type phenotype definition		Part 1 discovery cohort pre-processing and cell type phenotype definition
Part 10 HCC scSEQ data		Part 10 HCC scSEQ data
Part 11 HCC stSEQ		Part 11 HCC stSEQ
Part 12 voronoi plot		Part 12 voronoi plot
Part 2 discovery cohort CN definition		Part 2 discovery cohort CN definition
Part 3 discovery cohort TP SP TPL		Part 3 discovery cohort TP SP TPL
Part 4 discovery cohort pairwise cell-cell interaction likelihood ratio		Part 4 discovery cohort pairwise cell-cell interaction likelihood ratio
Part 5 other figures in Fig1-4 Fig S1-6		Part 5 other figures in Fig1-4 Fig S1-6
Part 6 validation cohort pre-processing and cell type phenotype definition		Part 6 validation cohort pre-processing and cell type phenotype definition
Part 7 validation cohort analysis		Part 7 validation cohort analysis
Part 8 random forest classifier		Part 8 random forest classifier
Part 9 Macrophage vimentin related figures		Part 9 Macrophage vimentin related figures
README.md		README.md

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