[FIX] limit test resources and fix configs

scilus · Nov 18, 2024 · 91bc1d6 · 91bc1d6
1 parent b9836b5
commit 91bc1d6
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Showing 3 changed files with 15 additions and 6 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -347,11 +347,7 @@ profiles {
         executor.cpus           = 4
         executor.memory         = 8.GB
     }
-    test {
-        includeConfig 'conf/test.config'
-        process.memory          = '1 GB'
-        process.cpus            = 1
-    }
+    test      { includeConfig 'conf/test.config'      }
     test_full { includeConfig 'conf/test_full.config' }
     no_symlink {
         params.publish_dir_mode = 'copy'

diff --git a/nf-test.config b/nf-test.config
@@ -1,7 +1,7 @@
 config {
     testsDir "tests"
     workDir ".nf-test"
-    configFile "./nextflow.config"
+    configFile "tests/nextflow.config"
     libDir "tests/lib"
     profile "docker"
     withTrace false

diff --git a/tests/nextflow.config b/tests/nextflow.config
@@ -0,0 +1,13 @@
+/*
+========================================================================================
+    Nextflow config file for running tests
+========================================================================================
+*/
+
+process {
+    withName: '.*' {
+        cpus   = 2
+        memory = 3.GB
+        time   = 2.h
+    }
+}