fix latest scripts

scilus · Jul 8, 2021 · d258559 · d258559
1 parent 960dcd8
commit d258559
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/scripts/scil_analyse_lesions_load.py b/scripts/scil_analyse_lesions_load.py
@@ -81,7 +81,7 @@ def main():
                                    args.out_streamlines_stats])
 
     lesion_img = nib.load(args.in_lesion)
-    lesion_data = get_data_as_mask(lesion_img, dtype=np.bool)
+    lesion_data = get_data_as_mask(lesion_img, dtype=bool)
 
     if args.bundle:
         bundle_name, _ = split_name_with_nii(os.path.basename(args.bundle))
@@ -112,7 +112,6 @@ def main():
         voxel_sizes=voxel_sizes, min_lesion_vol=args.min_lesion_vol)
 
     if args.out_lesion_atlas:
-        # lesion_atlas *= map_data.astype(np.bool)
         nib.save(nib.Nifti1Image(lesion_atlas, lesion_img.affine),
                  args.out_lesion_atlas)
 

diff --git a/scripts/scil_compute_connectivity.py b/scripts/scil_compute_connectivity.py
@@ -185,7 +185,7 @@ def _processing_wrapper(args):
                 lesion_img.set_filename('tmp.nii.gz')
                 lesion_atlas = get_data_as_label(lesion_img)
                 tmp_dict = compute_lesion_stats(
-                    density.astype(np.bool), lesion_atlas,
+                    density.astype(bool), lesion_atlas,
                     voxel_sizes=voxel_sizes, single_label=True,
                     min_lesion_vol=min_lesion_vol,
                     precomputed_lesion_labels=computed_lesion_labels)
@@ -329,7 +329,7 @@ def main():
     if args.lesion_load is not None:
         in_name = args.lesion_load[0]
         lesion_img = nib.load(in_name)
-        lesion_data = get_data_as_mask(lesion_img, dtype=np.bool)
+        lesion_data = get_data_as_mask(lesion_img, dtype=bool)
         lesion_atlas, _ = ndi.label(lesion_data)
         measures_to_compute.append(((in_name, np.unique(lesion_atlas)[1:]),
                                     nib.Nifti1Image(lesion_atlas,