1.4.0

Holy 🐮 🐮 🐮 !

🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀
🚀 Congrats everybody for this amazing work ! 🚀
🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀🚀

SCILUS team you rock !! 🎉

🔥 @CHrlS98 🔥
🔥 @EmmaRenauld 🔥
🔥 @AlexVCaron 🔥
🔥 @karanphil 🔥
🔥 @frheault 🔥
🔥 @AntoineTheb 🔥

What's Changed

• Better docstring for scil_validate_and_correct_bvecs by @CHrlS98 in #570
• Improve DOC on scil_resample_tractogram.py by @frheault in #574
• Fix wrong condition for is_voxel_in_bound used in dev tracking by @CHrlS98 in #569
• Small fixes and improvements in tractogram filtering scripts by @EmmaRenauld in #567
• Adding new filtering script by orientation by @EmmaRenauld in #571
• Fix fix dsi studio by @frheault in #572
• Add mask option for bingham fit and metrics by @CHrlS98 in #573
• Fixing coordinate type + decreasing test size in dev tracking by @EmmaRenauld in #581
• Warn user for rk > 1 with prob tracking in dev tracking by @CHrlS98 in #580
• Clean pep8 in the fetcher file by @EmmaRenauld in #582
• Modifying scil_score tractogram by @EmmaRenauld in #568
• Simple GPU tracking by @CHrlS98 in #576
• Small changes in the dev tracker by @EmmaRenauld in #585
• Fixing transform_anatomy by @karanphil in #586
• Add split image script by @karanphil in #584
• Enhance GPU tracking by @CHrlS98 in #587
• Upgrading dipy by @EmmaRenauld in #578
• Fix case with no wpc in scil_score_tractogram by @EmmaRenauld in #595
• Modify scil_cut_streamlines.py by @karanphil in #588
• [BF] Fix arg in invalid streamlines + warning in todi by @arnaudbore in #589
• [BF] Fix bug in scil_concatenate_dwi.py when supplying more than 2 images by @CHrlS98 in #603
• Fix lazy usage with tck files by @EmmaRenauld in #598
• Fix F1 score by @EmmaRenauld in #600
• ENH: Add overlapping volume mosaic screenshot script by @jhlegarreta in #577
• ENH: Adding QBx option in subsampling + cleaning by @EmmaRenauld in #590
• Clarify vox space by @EmmaRenauld in #593
• Update prepare eddy by @arnaudbore in #609
• update jenkins and requirements by @arnaudbore in #611
• ENH: scil scoring unique streamlines by @AntoineTheb in #614
• Added a 'must_pass_mask' by @EmmaRenauld in #599
• [BF] Update bundle metrics - handle NaN by @arnaudbore in #619
• New assign color options by @frheault in #566
• Add a function to verify compatibility by @arnaudbore in #616
• Moving methods by @EmmaRenauld in #621
• New method to get n seeds at once. by @EmmaRenauld in #597
• Add arguments for RGB color ODF and RGB background color by @karanphil in #612
• Change default interpolation for mask by @CHrlS98 in #625
• Fix jenkins by @arnaudbore in #635
• [WIP] Correlate dwi QC by @frheault in #528
• WIP: New labels maps and simplification of tractometry profile scripts by @frheault in #554
• [ENH] Add multiple ID to filter tractogram with atlas by @arnaudbore in #627
• scil_assign_custom_color_to_tractogram.py optional colorbar image output by @CHrlS98 in #629
• Trilinear interpolation + sf threshold for GPU tracking by @CHrlS98 in #613
• ENH: unit test PoC by @AntoineTheb in #631
• Creating new script to score tractogram that is already segmented. by @EmmaRenauld in #622
• Bug fix for scil_swap_gradient_axis by @CHrlS98 in #634
• [ENH] Validate bids by @arnaudbore in #591
• Fix rare division by 0 in f1 by @EmmaRenauld in #642
• Gradient sampling ajustment by @karanphil in #626
• [ENH] Extract gradient scheme from eddy output - for tractoflow by @arnaudbore in #623
• Tensor format by @EmmaRenauld in #637
• [BF] validate BIDS by @arnaudbore in #645
• Fix: names for overreach by @EmmaRenauld in #643
• Add check_bbox_false (only in scil_score_bundles) by @EmmaRenauld in #646
• Fix logging across scilpy by @frheault in #647
• Fix logging for RBx (file handling) by @frheault in #649
• Fix total count by @EmmaRenauld in #650
• [BF] BG color as optional function argument by @CHrlS98 in #651
• Fix fetcher by @EmmaRenauld in #655
• BF validate_bids when full reverse by @arnaudbore in #654

Full Changelog: 1.3.0...1.4.0