Install hdf5tools in workflow

scverse · Dec 12, 2024 · 4edee29 · 4edee29
1 parent 2bc42bf
commit 4edee29
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -64,6 +64,17 @@ jobs:
           reticulate::py_install(c("anndata", "scanpy", "dummy-anndata"), pip = TRUE)
         shell: Rscript {0}
 
+      - name: Install h5diff
+        run:   |
+              if [ "$RUNNER_OS" == "Linux" ]; then
+                    sudo apt-get install hdf5tools
+              else
+                    echo "$RUNNER_OS not supported"
+                    exit 1
+              fi
+        shell: bash
+
+
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true