update harmony to new implementation (#308)

* add basic code * add typing * add returns * add typing to fuse * add comments and starting point * remove fuse clip * update releases * Update src/rapids_singlecell/preprocessing/_harmony/__init__.py Co-authored-by: Philipp A. <[email protected]> * Update src/rapids_singlecell/preprocessing/_harmony/__init__.py Co-authored-by: Philipp A. <[email protected]> * update partial fixes * update * update kwags * add comment for _clustering * add release note * fmt * updated docstring * updated names * update docsstring and variables * docstring for _normalize_cp * update docstring --------- Co-authored-by: Philipp A. <[email protected]>
scverse · Dec 19, 2024 · 01dd624 · 01dd624
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diff --git a/docs/release-notes/0.10.12.md → docs/release-notes/0.11.0.md b/docs/release-notes/0.10.12.md → docs/release-notes/0.11.0.md
@@ -1,8 +1,9 @@
-### 0.10.12 {small}`the-future`
+### 0.11.0 {small}`the-future`
 
 ```{rubric} Features
 ```
 * use `cuvs` over `raft` for `pp.neighbors` for `rapids>=24.12`{pr}`304` {smaller}`S Dicks`
+* switched to a different implementation of `pp.harmony_integrate` {pr}`308` {smaller}`S Dicks`
 ```{rubric} Performance
 ```
 ```{rubric} Bug fixes

diff --git a/docs/release-notes/index.md b/docs/release-notes/index.md
@@ -2,9 +2,11 @@
 
 # Release notes
 
-## Version 0.10.0
-```{include} /release-notes/0.10.12.md
+## Version 0.11.0
+```{include} /release-notes/0.11.0.md
 ```
+
+## Version 0.10.0
 ```{include} /release-notes/0.10.11.md
 ```
 ```{include} /release-notes/0.10.10.md

diff --git a/pyproject.toml b/pyproject.toml
@@ -84,10 +84,8 @@ lint.ignore = [
 "docs/*" = ["I"]
 "tests/*" = ["D"]
 "*/__init__.py" = ["F401"]
-"src/rapids_singlecell/preprocessing/_harmonypy_gpu.py" = ["PLR0917"]
 "src/rapids_singlecell/decoupler_gpu/_method_mlm.py" = ["PLR0917"]
 "src/rapids_singlecell/decoupler_gpu/_method_wsum.py" = ["PLR0917"]
-
 [tool.ruff.lint.isort]
 known-first-party = ["rapids_singlecell"]
 required-imports = ["from __future__ import annotations"]