[pre-commit.ci] pre-commit autoupdate (#317)

scverse · Jan 13, 2025 · 5eaecc5 · 5eaecc5
1 parent 284d9f7
commit 5eaecc5
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.4
+    rev: v0.9.1
     hooks:
     -   id: ruff
         types_or: [python, pyi, jupyter]

diff --git a/src/rapids_singlecell/preprocessing/_simple.py b/src/rapids_singlecell/preprocessing/_simple.py
@@ -98,7 +98,7 @@ def filter_genes(
 
         if verbose:
             print(
-                f"filtered out {adata.var.shape[0]-thr.sum()} genes based on {qc_var}"
+                f"filtered out {adata.var.shape[0] - thr.sum()} genes based on {qc_var}"
             )
 
         adata._inplace_subset_var(thr)
@@ -122,7 +122,7 @@ def filter_genes(
             thr = adata.var[qc_var] <= max_count
         if verbose:
             print(
-                f"filtered out {adata.var.shape[0]-thr.sum()} genes based on {qc_var}"
+                f"filtered out {adata.var.shape[0] - thr.sum()} genes based on {qc_var}"
             )
 
         adata._inplace_subset_var(thr)
@@ -173,7 +173,7 @@ def filter_cells(
         else:
             print("Please specify a cutoff to filter against")
         if verbose:
-            print(f"filtered out {adata.obs.shape[0]-inter.sum()} cells")
+            print(f"filtered out {adata.obs.shape[0] - inter.sum()} cells")
         adata._inplace_subset_obs(inter)
     elif qc_var in ["n_genes_by_counts", "total_counts"]:
         if verbose:
@@ -191,7 +191,7 @@ def filter_cells(
         else:
             print("Please specify a cutoff to filter against")
         if verbose:
-            print(f"filtered out {adata.obs.shape[0]-inter.sum()} cells")
+            print(f"filtered out {adata.obs.shape[0] - inter.sum()} cells")
         adata._inplace_subset_obs(inter)
     else:
         print("Please check qc_var.")

diff --git a/src/rapids_singlecell/tools/_draw_graph.py b/src/rapids_singlecell/tools/_draw_graph.py
@@ -76,7 +76,7 @@ def draw_graph(
                     init_coords[subset] = group_pos
         else:
             raise ValueError(
-                "Plot PAGA first, so that adata.uns['paga']" "with key 'pos'."
+                "Plot PAGA first, so that adata.uns['paga']with key 'pos'."
             )
 
     else: