bartjuw is building libantimonyjs #74
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| name: build-libantimonyjs-github-actions | |
| run-name: ${{ github.actor }} is building libantimonyjs | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| antimony_version: | |
| description: 'Antimony version number' | |
| required: true | |
| default: '2.13.4' | |
| libsbml_version: | |
| description: 'LibSBML version number' | |
| required: true | |
| default: '5.20.0' | |
| jobs: | |
| build-new-version-antimonyjs: | |
| runs-on: ubuntu-latest | |
| env: | |
| EMSDK: emsdk | |
| EMSCRIPTEN_VERS: '3.1.20' | |
| EMSDK_NODE: emsdk/node/16.20.0_64bit/bin/node | |
| SBML_VERS: ${{ inputs.libsbml_version }} | |
| ANT_VERS: ${{ inputs.antimony_version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: get emscripten | |
| run: git clone https://github.com/emscripten-core/emsdk.git | |
| - name: change emsdk script permissions | |
| run: chmod +x emsdk | |
| working-directory: emsdk | |
| - name: install emscripten sdk | |
| run: ./emsdk install $EMSCRIPTEN_VERS | |
| working-directory: emsdk | |
| - name: activate emscripten | |
| run: ./emsdk activate $EMSCRIPTEN_VERS | |
| working-directory: emsdk | |
| - run: echo "$GITHUB_WORKSPACE/emsdk/upstream/emscripten" >> $GITHUB_PATH | |
| - run: echo "$GITHUB_WORKSPACE/emsdk" >> $GITHUB_PATH | |
| - name: confirm emscripten works | |
| run: emcc -v | |
| - run: echo $PATH | |
| - run: echo $EMSDK_NODE | |
| - run: mkdir install | |
| - run: wget https://github.com/libexpat/libexpat/releases/download/R_2_2_10/expat-2.2.10.tar.bz2 | |
| - run: tar -xf expat-2.2.10.tar.bz2 | |
| - run: mv expat-2.2.10 expat | |
| - name: make expat build dir | |
| run: mkdir build | |
| working-directory: expat | |
| - name: build expat lib | |
| run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/expat | |
| working-directory: expat/build | |
| - name: Compile expat lib | |
| run: emmake make | |
| working-directory: expat/build | |
| - name: install expat lib | |
| run: emmake make install | |
| working-directory: expat/build | |
| - name: Get libSBML | |
| run: wget https://github.com/sbmlteam/libsbml/archive/refs/tags/v$SBML_VERS.zip | |
| - run: unzip v$SBML_VERS.zip | |
| - run: mv libsbml-$SBML_VERS libsbml | |
| - name: make libsbml build dir | |
| run: mkdir build | |
| working-directory: libsbml | |
| - name: build libsbml library | |
| run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/sbml -DCMAKE_BUILD_TYPE=Release -DWITH_CPP_NAMESPACE=ON -DWITH_EXPAT=ON -DWITH_LIBXML=OFF -DLIBSBML_SKIP_SHARED_LIBRARY=ON -DENABLE_ARRAYS=ON -DENABLE_COMP=ON -DENABLE_DISTRIB=ON -DENABLE_FBC=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DENABLE_QUAL=ON -DWITH_STABLE_PACKAGES=ON -DWITH_SWIG=OFF -DEXPAT_INCLUDE_DIR=$GITHUB_WORKSPACE/install/expat/include -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a | |
| working-directory: libsbml/build | |
| - name: compile libsbml lib | |
| run: emmake make | |
| working-directory: libsbml/build | |
| - name: install libsbml | |
| run: emmake make install | |
| working-directory: libsbml/build | |
| - name: Get antimony | |
| run: wget https://github.com/sys-bio/antimony/archive/refs/tags/v$ANT_VERS.zip | |
| - run: unzip v$ANT_VERS.zip | |
| - run: mv antimony-$ANT_VERS/ antimony | |
| - name: make antimony build dir | |
| run: mkdir build | |
| working-directory: antimony | |
| - name: Build antimony library | |
| run: emcmake cmake .. -DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE/install/antimony -DCMAKE_BUILD_TYPE=Release -DEXPAT_LIBRARY=$GITHUB_WORKSPACE/install/expat/lib/libexpat.a -DLIBSBML_INCLUDE_DIR=$GITHUB_WORKSPACE/install/sbml/include -DLIBSBML_INSTALL_DIR=$GITHUB_WORKSPACE/install/sbml -DLIBSBML_LIBRARY=$GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a -DWITH_CELLML=OFF -DWITH_CHECK=OFF -DWITH_COMP_SBML=ON -DWITH_LIBSBML_COMPRESSION=OFF -DWITH_LIBSBML_EXPAT=ON -DWITH_LIBSBML_LIBXML=OFF -DWITH_LIBSBML_XERCES=OFF -DWITH_PYTHON=OFF -DWITH_QTANTIMONY=OFF -DWITH_SBML=ON -DWITH_STATIC_SBML=ON -DWITH_SWIG=OFF | |
| working-directory: antimony/build | |
| - name: Compile antimony lib | |
| run: emmake make | |
| working-directory: antimony/build | |
| - name: Install antimony lib | |
| run: emmake make install | |
| working-directory: antimony/build | |
| - name: Generate antimony javascript and wasm files | |
| run: emcc -Oz -sDISABLE_EXCEPTION_CATCHING=0 -sMODULARIZE=1 -sSINGLE_FILE=1 -sEXPORT_NAME=libantimony -sALLOW_MEMORY_GROWTH=1 -I$GITHUB_WORKSPACE/install/antimony/include -I$GITHUB_WORKSPACE/install/sbml/include -I$GITHUB_WORKSPACE/install/expat/include $GITHUB_WORKSPACE/install/antimony/lib/libantimony.a $GITHUB_WORKSPACE/install/sbml/lib/libsbml-static.a $GITHUB_WORKSPACE/install/expat/lib/libexpat.a -o libantimony.js -sEXPORTED_FUNCTIONS=_loadString,_loadAntimonyString,_loadSBMLString,_clearPreviousLoads,_getAntimonyString,_getSBMLString,_getCompSBMLString,_getLastError,_getWarnings,_getSBMLInfoMessages,_getSBMLWarnings,_freeAll,_malloc,_free -sEXPORTED_RUNTIME_METHODS=ccall,cwrap,allocateUTF8,UTF8ToString | |
| working-directory: install | |
| - name: List build libantimonyjs files | |
| run: ls -l | |
| working-directory: install | |
| - name: Copy libantimonyjs to test dir | |
| run: cp libantimony.* $GITHUB_WORKSPACE/test | |
| working-directory: install | |
| - name: check built files exist | |
| run: ls -l | |
| working-directory: test | |
| - name: Check node is available | |
| run: node -v | |
| working-directory: test | |
| - name: run tests | |
| run: node test_antimony.js >> results.txt | |
| working-directory: test | |
| - name: output test results | |
| run: cat results.txt | |
| working-directory: test | |
| - name: Check test results | |
| run: grep 'Fail- 0' results.txt | |
| working-directory: test | |
| - name: Commit new libantimony files | |
| run: mkdir v$ANT_VERS | |
| working-directory: release | |
| - name: Copy libantimonyjs to release dir | |
| run: cp libantimony.* $GITHUB_WORKSPACE/release/v$ANT_VERS | |
| working-directory: install | |
| - name: Copy antimony_wrap.js to release dir | |
| run: cp $GITHUB_WORKSPACE/scripts/antimony_wrap.js $GITHUB_WORKSPACE/release/v$ANT_VERS | |
| - name: generate ReleaseInfo.txt | |
| run: echo "libantimonyjs release $ANT_VERS" > v$ANT_VERS/ReleaseInfo.txt | |
| working-directory: release | |
| - run: echo "libSBML source- $SBML_VERS" >> v$ANT_VERS/ReleaseInfo.txt | |
| working-directory: release | |
| - run: echo "Antimony source- $ANT_VERS" >> v$ANT_VERS/ReleaseInfo.txt | |
| working-directory: release | |
| - run: echo "Emscripten version- $EMSCRIPTEN_VERS" >> v$ANT_VERS/ReleaseInfo.txt | |
| working-directory: release | |
| - run: echo "Following methods are available- From Antimony library - _loadString, _loadAntimonyString, _loadSBMLString, _clearPreviousLoads, _getAntimonyString, _freeAll, _getSBMLString, _getCompSBMLString, _getLastError, _getWarnings, _getSBMLInfoMessages, _getSBMLWarnings." >> v$ANT_VERS/ReleaseInfo.txt | |
| working-directory: release | |
| - run: echo "From Emscripten - _malloc, _free, ccall, cwrap, allocateUTF8, UTF8ToString." >> v$ANT_VERS/ReleaseInfo.txt | |
| working-directory: release | |
| - run: cp -f v$ANT_VERS/ReleaseInfo.txt $GITHUB_WORKSPACE/docs | |
| working-directory: release | |
| - name: Copy libantimonyjs to docs dir | |
| run: cp -f libantimony.* $GITHUB_WORKSPACE/docs | |
| working-directory: install | |
| - name: Check in changes | |
| run: | | |
| date > generated.txt | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| git add release/v$ANT_VERS/libantimony.js release/v$ANT_VERS/libantimony.wasm release/v$ANT_VERS/ReleaseInfo.txt | |
| git commit -m "new build for antimony v$ANT_VERS" release/v$ANT_VERS/libantimony.js release/v$ANT_VERS/libantimony.wasm release/v$ANT_VERS/ReleaseInfo.txt docs/libantimony.js docs/libantimony.wasm docs/ReleaseInfo.txt | |
| git push | |