MueLu: Material dropping #13662

cgcgcg · 2024-12-10T14:06:07Z

@trilinos/muelu

Motivation

Add material distance Laplacian dropping.
Propagate material MV through the hierarchy.
Hook up matrix analysis in ParameterListInterpreter.
Correctly handle "filtering: Dirichlet threshold" in CoalesceDrop_kokkos.
Add option "aggregation: backend" that allows to choose which code path to take.

packages/muelu/test/scaling/Amat.mm

trilinos-autotester · 2024-12-10T14:34:00Z

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trilinos-autotester · 2024-12-10T14:40:33Z

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Pull Request Author: cgcgcg

trilinos-autotester · 2024-12-10T15:44:41Z

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jhux2

I agree, the material file is too large.

trilinos-autotester · 2024-12-23T17:43:03Z

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Repo: TRILINOS (cgcgcg/Trilinos)

Pull Request Author: cgcgcg

trilinos-autotester · 2024-12-23T18:41:32Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

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CDash Test Results for PR# 13662.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2024-12-23T20:23:09Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2024-12-23T20:28:45Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (cgcgcg/Trilinos)

Pull Request Author: cgcgcg

trilinos-autotester · 2024-12-23T21:06:02Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

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CDash Test Results for PR# 13662.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2025-01-13T18:22:59Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-01-13T18:23:06Z

Status Flag 'Pull Request AutoTester' - GitHub reports Mergeable status = False

trilinos-autotester · 2025-01-13T19:42:58Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-01-13T19:48:50Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (cgcgcg/Trilinos)

Pull Request Author: cgcgcg

trilinos-autotester · 2025-01-13T20:24:07Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 13662.

Wiki: How to Reproduce PR Testing Builds and Errors.

Signed-off-by: maxfirmbach <[email protected]>

Signed-off-by: Christian Glusa <[email protected]>

…Dirichlet threshold" Signed-off-by: Christian Glusa <[email protected]>

…ckend" The option allows to select the aggregation code path: - "default": do whatever matches the input graph, - "host": old, host-only aggregation code path, - "kokkos": Kokkos code path. Signed-off-by: Christian Glusa <[email protected]>

trilinos-autotester · 2025-01-15T01:18:17Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2025-01-15T01:18:20Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-01-15T01:23:06Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (cgcgcg/Trilinos)

Pull Request Author: cgcgcg

trilinos-autotester · 2025-01-15T01:57:53Z

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Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

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CDash Test Results for PR# 13662.

Wiki: How to Reproduce PR Testing Builds and Errors.

Signed-off-by: Christian Glusa <[email protected]>

trilinos-autotester · 2025-01-15T18:22:50Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2025-01-15T18:22:53Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-01-15T18:27:46Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (cgcgcg/Trilinos)

Pull Request Author: cgcgcg

trilinos-autotester · 2025-01-15T19:04:58Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

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CDash Test Results for PR# 13662.

trilinos-autotester · 2025-01-15T19:05:16Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

trilinos-autotester · 2025-01-15T19:05:23Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

maxfirmbach · 2025-01-16T06:24:54Z

Auto-Tester passes now 🚀

csiefer2 · 2025-01-15T22:43:37Z

packages/muelu/doc/UsersGuide/masterList.xml

+      <type>string</type>
+      <default>unweighted</default>
+      <description>Metric used to compute the distance laplacian</description>
+      <visible>false</visible>


Options are?

„unweighted“ and „material“, not a big deal to add to the docu

csiefer2 · 2025-01-15T22:43:52Z

packages/muelu/doc/UsersGuide/masterList.xml

+      <type>bool</type>
+      <default>false</default>
+      <description>Compute matrix analysis.</description>
+      <visible>false</visible>


What does this do?

If enabled it checks the matrix diagonal for small values, calculates if the matrix features diagonal dominance etc.

csiefer2 · 2025-01-15T22:46:00Z

packages/muelu/src/Graph/Containers/MueLu_LWGraph_def.hpp

+template <class LocalOrdinal, class GlobalOrdinal, class Node>
+RCP<MueLu::LWGraph_kokkos<LocalOrdinal, GlobalOrdinal, Node> > MueLu::LWGraph<LocalOrdinal, GlobalOrdinal, Node>::copyToDevice() {
+  auto graph = this->getGraph();
+


Is there a reason to do a host-accessibilty check here to avoid the copy on unified memory? Or is that not worth the effort?

csiefer2 · 2025-01-15T22:47:18Z

packages/muelu/src/Graph/MatrixTransformation/MueLu_DistanceLaplacianDropping.hpp

+
+      KokkosBatched::SerialTrsv<KokkosBatched::Uplo::Lower, KokkosBatched::Trans::NoTranspose, KokkosBatched::Diag::Unit, KokkosBatched::Algo::Trsv::Unblocked>::invoke(one, matrix_col_material, dist);
+      KokkosBatched::SerialTrsv<KokkosBatched::Uplo::Upper, KokkosBatched::Trans::NoTranspose, KokkosBatched::Diag::NonUnit, KokkosBatched::Algo::Trsv::Unblocked>::invoke(one, matrix_col_material, dist);
+


KokkosBatched. Very nice!

csiefer2 · 2025-01-15T22:47:56Z

packages/muelu/src/Graph/MatrixTransformation/MueLu_MatrixConstruction.hpp

@@ -300,6 +304,8 @@ class PointwiseFillReuseFunctor {
    }
    if constexpr (lumping) {
      rowFilteredA.value(diagOffset) += diagCorrection;
+      if ((dirichletThreshold >= 0.0) && (ATS::real(rowFilteredA.value(diagOffset)) <= dirichletThreshold))
+        rowFilteredA.value(diagOffset) = one;
    }


Is checking the real part the right thing to do here for complex matrices?

This mirrors the non-Kokkos code path. We could do abs instead of real..

csiefer2 · 2025-01-15T22:48:29Z

packages/muelu/src/Graph/MatrixTransformation/MueLu_MatrixConstruction.hpp

@@ -844,6 +860,8 @@ class VectorFillFunctor {
      }
      if constexpr (lumping) {
        rowFilteredA.value(diagOffset) += diagCorrection;
+        if ((dirichletThreshold >= 0.0) && (ATS::real(rowFilteredA.value(diagOffset)) <= dirichletThreshold))
+          rowFilteredA.value(diagOffset) = one;


See previous comment... and the one before that.

csiefer2 · 2025-01-15T22:49:22Z

packages/muelu/src/Interface/MueLu_ParameterListInterpreter_def.hpp

+    UpdateFactoryManager_Material(ParameterList& paramList, const ParameterList& /* defaultList */,
+                                  FactoryManager& manager, int /* levelID */, std::vector<keep_pair>& /* keeps */) const {
+  bool have_userMATERIAL = false;
+  if (paramList.isParameter("Material") && !paramList.get<RCP<MultiVector> >("Material").is_null())


Capital MATERIAL. Really?

csiefer2 · 2025-01-15T22:50:39Z

packages/muelu/src/Interface/MueLu_ParameterListInterpreter_def.hpp

+      ParameterList materialTransferParameters;
+      materialTransferParameters.set("Vector name", "Material");
+      materialTransferParameters.set("Transfer name", "P");
+      materialTransferParameters.set("Normalize", true);


The FactoryManager opts for Ptent instead of P for "Transfer name". Is this a problem?

I would say we should use Ptent.

csiefer2 · 2025-01-15T22:51:40Z

packages/muelu/src/Operators/MueLu_RefMaxwell_def.hpp

+  //   GetOStream(Warnings0) << solverName_ + "::compute(): Setting \"aggregation: drop tol\". to 0.0, since CoalesceDropFactory_kokkos does not "
+  //                         << "support BlockSize > 1 and drop tol != 0.0" << std::endl;
+  //   precList11_.set("aggregation: drop tol", 0.0);
+  // }
 }


Delete rather than comment?

csiefer2 · 2025-01-15T22:52:56Z

packages/muelu/src/Utils/MueLu_AggregationExportFactory_def.hpp

  Teuchos::RCP<LWGraph> fineGraph   = Teuchos::null;
  Teuchos::RCP<LWGraph> coarseGraph = Teuchos::null;
  if (doFineGraphEdges_)
-    fineGraph = Get<RCP<LWGraph> >(fineLevel, "Graph");
+    fineGraph = Get<RCP<LWGraph>>(fineLevel, "Graph");
  if (doCoarseGraphEdges_)


Someone went to war on spaces here.

cgcgcg added the pkg: MueLu label Dec 10, 2024

cgcgcg assigned cgcgcg and maxfirmbach Dec 10, 2024

cgcgcg commented Dec 10, 2024

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packages/muelu/test/scaling/Amat.mm Outdated Show resolved Hide resolved

cgcgcg added the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Dec 10, 2024

jhux2 requested changes Dec 10, 2024

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cgcgcg force-pushed the materialDroppingMax branch from be0148e to 499d67c Compare December 10, 2024 18:41

cgcgcg force-pushed the materialDroppingMax branch from 499d67c to bfa00f1 Compare December 23, 2024 17:29

cgcgcg added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Dec 23, 2024

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Dec 23, 2024

cgcgcg force-pushed the materialDroppingMax branch from bfa00f1 to 785279c Compare December 23, 2024 20:13

cgcgcg force-pushed the materialDroppingMax branch from 785279c to 56c26cf Compare January 13, 2025 18:16

cgcgcg force-pushed the materialDroppingMax branch from 8bd43d1 to c7abc51 Compare January 13, 2025 19:37

cgcgcg force-pushed the materialDroppingMax branch from c7abc51 to 5d0df4e Compare January 13, 2025 19:47

maxfirmbach and others added 9 commits January 14, 2025 15:55

MueLu: Add material parameter to CreateTpetraPreconditioner

1fdf4c0

Signed-off-by: maxfirmbach <[email protected]>

MueLu: Add material output to aggregate export

0212bde

Signed-off-by: maxfirmbach <[email protected]>

MueLu: Hook up matrix analysis to parameterlist

5aceb76

Signed-off-by: maxfirmbach <[email protected]>

MueLu: Add material rebalancing

8ec9b12

Signed-off-by: maxfirmbach <[email protected]>

MueLu Maxwell test: Fix help for precType flag

dfaa19e

Signed-off-by: Christian Glusa <[email protected]>

MueLu RefMaxwell: Add option to pass in material

4c51a9c

Signed-off-by: Christian Glusa <[email protected]>

MueLu Maxwell1: Add option to pass in material

2922672

Signed-off-by: Christian Glusa <[email protected]>

MueLu CoalesceDropFactory_kokkos: Correctly handle "filtered matrix: …

2601cd9

…Dirichlet threshold" Signed-off-by: Christian Glusa <[email protected]>

cgcgcg force-pushed the materialDroppingMax branch from 6a7e10b to 8209309 Compare January 14, 2025 22:55

cgcgcg added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration and removed AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) labels Jan 15, 2025

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jan 15, 2025

MueLu: Rebase gold files

accf515

Signed-off-by: Christian Glusa <[email protected]>

cgcgcg added AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed labels Jan 15, 2025

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Jan 15, 2025

csiefer2 reviewed Jan 16, 2025

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jhux2 self-requested a review January 16, 2025 16:25


		KokkosBatched::SerialTrsv<KokkosBatched::Uplo::Lower, KokkosBatched::Trans::NoTranspose, KokkosBatched::Diag::Unit, KokkosBatched::Algo::Trsv::Unblocked>::invoke(one, matrix_col_material, dist);
		KokkosBatched::SerialTrsv<KokkosBatched::Uplo::Upper, KokkosBatched::Trans::NoTranspose, KokkosBatched::Diag::NonUnit, KokkosBatched::Algo::Trsv::Unblocked>::invoke(one, matrix_col_material, dist);

MueLu: Material dropping #13662

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MueLu: Material dropping #13662

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cgcgcg commented Dec 10, 2024 • edited Loading

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trilinos-autotester commented Dec 10, 2024

trilinos-autotester commented Dec 10, 2024

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trilinos-autotester commented Dec 10, 2024

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trilinos-autotester commented Dec 23, 2024

trilinos-autotester commented Dec 23, 2024

trilinos-autotester commented Dec 23, 2024

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cgcgcg commented Dec 10, 2024 •

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