Unable to install causalml #609

g0odplayer00 · 2023-03-28T18:16:03Z

Describe the bug
A clear and concise description of what the bug is.

To Reproduce
Steps to reproduce the behavior:

unable to install causalml in any means

Expected behavior
A clear and concise description of what you expected to happen.

Screenshots
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Environment (please complete the following information):
running on google colab

Additional context
Add any other context about the problem here.

jakirhasantalukder · 2023-04-05T05:23:36Z

same problem. I am also facing

sagagk · 2023-04-17T20:06:00Z

The same.

sagagk · 2023-04-19T06:10:56Z

I could use the package using Anaconda. It appears to work better with Python 3.8 (Current Google Colab uses 3.9, the typical downgrading generates a messy behaviour.. ). I use a terminal from Anaconda (tested in a Apple Mac Pro):

conda create -n my_env python=3.8
conda install -n my_env -c conda-forge causalml
conda activate my_env
conda install jupyter
jupyter notebook

If someone could run this package in Colab, I appreciate it.
*However, I also tried in Windows and it appears that causalml is not available in condeforge. :(

kalimosd · 2023-05-06T09:34:06Z

same in mac

talhaanwarch · 2023-05-10T03:42:30Z

Got same issue on Ubuntu 22.04
Here is full error

  Preparing metadata (setup.py) ... error
  error: subprocess-exited-with-error
  
  × python setup.py egg_info did not run successfully.
  │ exit code: 1
  ╰─> [798 lines of output]
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      # cython: language_level=3
      # cython: linetrace=True
      
      from sklearn.tree._tree cimport Tree, TreeBuilder
      from sklearn.tree._tree cimport Splitter, SplitRecord
      from sklearn.tree._utils cimport StackRecord, Stack
      ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:9:0: 'sklearn/tree/_utils/StackRecord.pxd' not found
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      # cython: language_level=3
      # cython: linetrace=True
      
      from sklearn.tree._tree cimport Tree, TreeBuilder
      from sklearn.tree._tree cimport Splitter, SplitRecord
      from sklearn.tree._utils cimport StackRecord, Stack
      ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:9:0: 'sklearn/tree/_utils/Stack.pxd' not found
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef bint is_leaf
              cdef bint first = 1
              cdef SIZE_t max_depth_seen = -1
              cdef int rc = 0
      
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
                  ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:90:13: 'Stack' is not a type identifier
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef bint first = 1
              cdef SIZE_t max_depth_seen = -1
              cdef int rc = 0
      
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
                  ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:91:13: 'StackRecord' is not a type identifier
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef double min_weight_leaf = self.min_weight_leaf
              cdef SIZE_t min_samples_split = self.min_samples_split
              cdef double min_impurity_decrease = self.min_impurity_decrease
      
              # Recursive partition (without actual recursion)
              splitter.init(X, y, sample_weight_ptr)
                                 ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:70:28: Cannot convert 'DOUBLE_t *' to memoryviewslice
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef bint is_leaf
              cdef bint first = 1
              cdef SIZE_t max_depth_seen = -1
              cdef int rc = 0
      
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
                                ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:90:27: 'Stack' is not a constant, variable or function identifier
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                                ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:27: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                                ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:27: Calling gil-requiring function not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                           ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:22: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                                ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:27: Constructing Python tuple not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                                    ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:31: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                                                       ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:50: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
              cdef Stack stack = Stack(INITIAL_STACK_SIZE)
              cdef StackRecord stack_record
      
              with nogil:
                  # push root node onto stack
                  rc = stack.push(0, n_node_samples, 0, _TREE_UNDEFINED, 0, INFINITY, 0)
                                                                           ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:95:70: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  if rc == -1:
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:101:36: Truth-testing Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  if rc == -1:
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:101:36: Calling gil-requiring function not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  if rc == -1:
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                                ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:101:27: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  if rc == -1:
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:101:36: Constructing Python tuple not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:102:25: Discarding owned Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:102:25: Calling gil-requiring function not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
                          ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:102:21: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:102:25: Constructing Python tuple not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # got return code -1 - out-of-memory
                      with gil:
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
                               ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:102:26: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:104:36: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                          raise MemoryError()
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:104:36: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                      end = stack_record.end
                                       ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:105:34: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      
                  while not stack.is_empty():
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                      end = stack_record.end
                                       ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:105:34: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  while not stack.is_empty():
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:106:36: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  while not stack.is_empty():
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:106:36: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                                          ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:107:37: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      stack.pop(&stack_record)
      
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                                          ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:107:37: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                      is_left = stack_record.is_left
                                           ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:108:38: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
      
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                      is_left = stack_record.is_left
                                           ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:108:38: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                      is_left = stack_record.is_left
                      impurity = stack_record.impurity
                                            ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:109:39: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      start = stack_record.start
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                      is_left = stack_record.is_left
                      impurity = stack_record.impurity
                                            ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:109:39: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                      is_left = stack_record.is_left
                      impurity = stack_record.impurity
                      n_constant_features = stack_record.n_constant_features
                                                       ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:110:50: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      end = stack_record.end
                      depth = stack_record.depth
                      parent = stack_record.parent
                      is_left = stack_record.is_left
                      impurity = stack_record.impurity
                      n_constant_features = stack_record.n_constant_features
                                                       ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:110:50: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                        ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:35: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                        ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:35: Calling gil-requiring function not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                   ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:30: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                        ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:35: Constructing Python tuple not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:41: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                                    ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:47: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                                               ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:58: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      # inspection and interpretation
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                                                    ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:147:63: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                          split.impurity_right, n_constant_features)
                                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:148:41: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                      splitter.node_value(tree.value + node_id * tree.value_stride)
      
                      if not is_leaf:
                          # Push right child on stack
                          rc = stack.push(split.pos, end, depth + 1, node_id, 0,
                                          split.impurity_right, n_constant_features)
                                                               ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:148:58: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                        ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:35: Coercion from Python not allowed without the GIL
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                        ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:35: Calling gil-requiring function not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                   ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:30: Accessing Python attribute not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                        ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:35: Constructing Python tuple not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                         ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:36: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                                     ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:48: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                                                 ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:60: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                                          split.impurity_right, n_constant_features)
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                                                      ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:153:65: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                          split.impurity_left, n_constant_features)
                                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:154:41: Converting to Python object not allowed without gil
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                          if rc == -1:
                              break
      
                          # Push left child on stack
                          rc = stack.push(start, split.pos, depth + 1, node_id, 1,
                                          split.impurity_left, n_constant_features)
                                                              ^
      ------------------------------------------------------------
      
      causalml/inference/tree/causal/builder.pyx:154:57: Converting to Python object not allowed without gil
      Traceback (most recent call last):
        File "<string>", line 2, in <module>
        File "<pip-setuptools-caller>", line 34, in <module>
        File "/tmp/pip-install-oj6b98hi/causalml_fb14bc15453e4f0585490dd11105553b/setup.py", line 80, in <module>
          ext_modules=cythonize(extensions, annotate=True),
        File "/home/talha/venv/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1115, in cythonize
          cythonize_one(*args)
        File "/home/talha/venv/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1238, in cythonize_one
          raise CompileError(None, pyx_file)
      Cython.Compiler.Errors.CompileError: causalml/inference/tree/causal/builder.pyx
      Compiling causalml/inference/tree/causal/criterion.pyx because it depends on /home/talha/venv/lib/python3.10/site-packages/Cython/Includes/cpython/type.pxd.
      Compiling causalml/inference/tree/causal/builder.pyx because it depends on /home/talha/venv/lib/python3.10/site-packages/Cython/Includes/cpython/type.pxd.
      Compiling causalml/inference/tree/uplift.pyx because it depends on /home/talha/venv/lib/python3.10/site-packages/Cython/Includes/cpython/type.pxd.
      [1/3] Cythonizing causalml/inference/tree/causal/builder.pyx
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

talhaanwarch · 2023-05-10T03:56:04Z

Installing from source installed the package.

mhfarahani · 2023-05-10T17:46:33Z

Same issue when trying to install the package on Sagemaker studio or Googlecolab. Downgrading the python to 3.8 did not help.
Also, I tried to install it from the source but it did not work.

mhfarahani · 2023-05-11T18:35:55Z

python 3.8.13, Sagemaker studio

Requirement already satisfied: setuptools>=41.0.0 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (67.6.1)
Collecting forestci==0.6
Using cached forestci-0.6-py3-none-any.whl (12 kB)
Collecting pathos==0.2.9
Using cached pathos-0.2.9-py3-none-any.whl (76 kB)
Requirement already satisfied: pip>=10.0 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (23.0.1)
Requirement already satisfied: numpy>=1.18.5 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 5)) (1.24.2)
Requirement already satisfied: scipy>=1.4.1 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 6)) (1.7.1)
Requirement already satisfied: matplotlib in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 7)) (3.4.3)
Requirement already satisfied: pandas>=0.24.1 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 8)) (1.3.4)
Requirement already satisfied: scikit-learn<=1.0.2 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 9)) (0.24.2)
Requirement already satisfied: statsmodels>=0.9.0 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 10)) (0.12.2)
Requirement already satisfied: seaborn in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 11)) (0.11.2)
Requirement already satisfied: Cython>=0.28.0 in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 12)) (0.29.24)
Collecting xgboost
Using cached xgboost-1.7.5-py3-none-manylinux2014_x86_64.whl (200.3 MB)
Collecting pydotplus
Using cached pydotplus-2.0.2-py3-none-any.whl
Requirement already satisfied: tqdm in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 15)) (4.62.3)
Collecting shap
Using cached shap-0.41.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (575 kB)
Requirement already satisfied: dill in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 17)) (0.3.6)
Collecting lightgbm
Using cached lightgbm-3.3.5-py3-none-manylinux1_x86_64.whl (2.0 MB)
Collecting pygam
Using cached pygam-0.9.0-py3-none-any.whl (522 kB)
Requirement already satisfied: packaging in /opt/conda/lib/python3.8/site-packages (from -r requirements.txt (line 20)) (21.0)
Collecting torch
Killed
Compiling causalml/inference/tree/causal/_criterion.pyx because it changed.
Compiling causalml/inference/tree/causal/_builder.pyx because it changed.
Compiling causalml/inference/tree/uplift.pyx because it changed.
[1/3] Cythonizing causalml/inference/tree/causal/_builder.pyx
[2/3] Cythonizing causalml/inference/tree/causal/_criterion.pyx
[3/3] Cythonizing causalml/inference/tree/uplift.pyx
running build_ext
building 'causalml.inference.tree.causal._criterion' extension
creating build
creating build/temp.linux-x86_64-cpython-38
creating build/temp.linux-x86_64-cpython-38/causalml
creating build/temp.linux-x86_64-cpython-38/causalml/inference
creating build/temp.linux-x86_64-cpython-38/causalml/inference/tree
creating build/temp.linux-x86_64-cpython-38/causalml/inference/tree/causal
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.8/site-packages/numpy/core/include -I/opt/conda/lib/python3.8/site-packages/numpy/core/include -I/opt/conda/include/python3.8 -c causalml/inference/tree/causal/_criterion.c -o build/temp.linux-x86_64-cpython-38/causalml/inference/tree/causal/_criterion.o -O3
/opt/conda/lib/python3.8/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /root/Causality/causalml/causalml/inference/tree/uplift.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/opt/conda/lib/python3.8/site-packages/setuptools/init.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
dist.fetch_build_eggs(dist.setup_requires)
/opt/conda/lib/python3.8/site-packages/setuptools/installer.py:45: UserWarning: Module numpy was already imported from /opt/conda/lib/python3.8/site-packages/numpy/init.py, but /root/Causality/causalml/.eggs/numpy-1.22.4-py3.8-linux-x86_64.egg is being added to sys.path
pkg_resources.working_set.add(dist, replace=True)
error: command 'gcc' failed: No such file or directory
running install
running bdist_egg
running egg_info
creating causalml.egg-info
writing causalml.egg-info/PKG-INFO
writing dependency_links to causalml.egg-info/dependency_links.txt
writing requirements to causalml.egg-info/requires.txt
writing top-level names to causalml.egg-info/top_level.txt
writing manifest file 'causalml.egg-info/SOURCES.txt'
reading manifest file 'causalml.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
/opt/conda/lib/python3.8/site-packages/setuptools/init.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
dist.fetch_build_eggs(dist.setup_requires)
/opt/conda/lib/python3.8/site-packages/setuptools/installer.py:45: UserWarning: Module numpy was already imported from /opt/conda/lib/python3.8/site-packages/numpy/init.py, but /root/Causality/causalml/.eggs/numpy-1.22.4-py3.8-linux-x86_64.egg is being added to sys.path
pkg_resources.working_set.add(dist, replace=True)
/opt/conda/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
/opt/conda/lib/python3.8/site-packages/setuptools/command/easy_install.py:144: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
warning: no files found matching '*.h' under directory 'causalml'
adding license file 'LICENSE'
writing manifest file 'causalml.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/causalml
copying causalml/propensity.py -> build/lib.linux-x86_64-cpython-38/causalml
copying causalml/match.py -> build/lib.linux-x86_64-cpython-38/causalml
copying causalml/features.py -> build/lib.linux-x86_64-cpython-38/causalml
copying causalml/init.py -> build/lib.linux-x86_64-cpython-38/causalml
creating build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/regression.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/synthetic.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/classification.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
copying causalml/dataset/init.py -> build/lib.linux-x86_64-cpython-38/causalml/dataset
creating build/lib.linux-x86_64-cpython-38/causalml/feature_selection
copying causalml/feature_selection/filters.py -> build/lib.linux-x86_64-cpython-38/causalml/feature_selection
copying causalml/feature_selection/init.py -> build/lib.linux-x86_64-cpython-38/causalml/feature_selection
creating build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/policylearner.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/pns.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/unit_selection.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/value_optimization.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
copying causalml/optimize/init.py -> build/lib.linux-x86_64-cpython-38/causalml/optimize
creating build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/regression.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/sensitivity.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/const.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/classification.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/visualize.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
copying causalml/metrics/init.py -> build/lib.linux-x86_64-cpython-38/causalml/metrics
creating build/lib.linux-x86_64-cpython-38/causalml/inference
copying causalml/inference/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference
creating build/lib.linux-x86_64-cpython-38/causalml/inference/tree
copying causalml/inference/tree/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree
copying causalml/inference/tree/plot.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree
copying causalml/inference/tree/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree
creating build/lib.linux-x86_64-cpython-38/causalml/inference/nn
copying causalml/inference/nn/cevae.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/nn
copying causalml/inference/nn/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/nn
creating build/lib.linux-x86_64-cpython-38/causalml/inference/tf
copying causalml/inference/tf/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tf
copying causalml/inference/tf/dragonnet.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tf
copying causalml/inference/tf/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tf
creating build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/xlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/utils.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/tlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/rlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/base.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/drlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/tmle.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/slearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
copying causalml/inference/meta/explainer.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/meta
creating build/lib.linux-x86_64-cpython-38/causalml/inference/iv
copying causalml/inference/iv/iv_regression.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/iv
copying causalml/inference/iv/drivlearner.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/iv
copying causalml/inference/iv/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/iv
creating build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/causaltree.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/_tree.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/causalforest.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
copying causalml/inference/tree/causal/init.py -> build/lib.linux-x86_64-cpython-38/causalml/inference/tree/causal
running build_ext
building 'causalml.inference.tree.causal._criterion' extension
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.8/site-packages/numpy/core/include -I/opt/conda/lib/python3.8/site-packages/numpy/core/include -I/opt/conda/include/python3.8 -c causalml/inference/tree/causal/_criterion.c -o build/temp.linux-x86_64-cpython-38/causalml/inference/tree/causal/_criterion.o -O3
error: command 'gcc' failed: No such file or directory

CalledProcessError Traceback (most recent call last)
Cell In[2], line 1
----> 1 get_ipython().run_cell_magic('sh', '', '\ncd causalml\npip install -r requirements.txt\npython setup.py build_ext --inplace\npython setup.py install\n')

File /opt/conda/lib/python3.8/site-packages/IPython/core/interactiveshell.py:2475, in InteractiveShell.run_cell_magic(self, magic_name, line, cell)
2473 with self.builtin_trap:
2474 args = (magic_arg_s, cell)
-> 2475 result = fn(*args, **kwargs)
2477 # The code below prevents the output from being displayed
2478 # when using magics with decodator @output_can_be_silenced
2479 # when the last Python token in the expression is a ';'.
2480 if getattr(fn, magic.MAGIC_OUTPUT_CAN_BE_SILENCED, False):

File /opt/conda/lib/python3.8/site-packages/IPython/core/magics/script.py:153, in ScriptMagics._make_script_magic..named_script_magic(line, cell)
151 else:
152 line = script
--> 153 return self.shebang(line, cell)

File /opt/conda/lib/python3.8/site-packages/IPython/core/magics/script.py:305, in ScriptMagics.shebang(self, line, cell)
300 if args.raise_error and p.returncode != 0:
301 # If we get here and p.returncode is still None, we must have
302 # killed it but not yet seen its return code. We don't wait for it,
303 # in case it's stuck in uninterruptible sleep. -9 = SIGKILL
304 rc = p.returncode or -9
--> 305 raise CalledProcessError(rc, cell)

CalledProcessError: Command 'b'\ncd causalml\npip install -r requirements.txt\npython setup.py build_ext --inplace\npython setup.py install\n'' returned non-zero exit status 1.

jakirhasantalukder · 2023-07-03T04:09:24Z

Initially run the following code:

!pip install Causalml
!pip install numpy==1.23.5

!git clone https://github.com/uber/causalml.git
!cd causalml
!pip install -r /content/causalml/requirements.txt
!python setup.py build_ext --inplace
!pip /content/causalml/setup.py install
!python setup.py install

! git clone https://github.com/uber/causalml.git
! cd causalml
! pip install -r /content/causalml/requirements-test.txt
! pip install causalml[tf]
! pip install -U numpy==1.23.5

!pip install numpy==1.23.4

!pip install -U scikit-learn==1.0.2

!pip uninstall scikit-learn
!pip install scikit-learn==1.0.2

when show- Proceed (Y/n)? Put Y and then enter

Then run-

import pandas as pd
import numpy as np
from matplotlib import pyplot as plt
import seaborn as sns
import torch

from sklearn.linear_model import LinearRegression
from sklearn.model_selection import train_test_split
from xgboost import XGBRegressor
from lightgbm import LGBMRegressor
from sklearn.metrics import mean_absolute_error
from sklearn.metrics import mean_squared_error as mse
from scipy.stats import entropy
import warnings
import logging

from causalml.inference.meta import BaseXRegressor, BaseRRegressor, BaseSRegressor, BaseTRegressor
from causalml.inference.nn import CEVAE
from causalml.propensity import ElasticNetPropensityModel
from causalml.metrics import *
from causalml.dataset import simulate_hidden_confounder

%matplotlib inline

warnings.filterwarnings('ignore')
logger = logging.getLogger('causalml')
logger.setLevel(logging.DEBUG)

plt.style.use('fivethirtyeight')
sns.set_palette('Paired')
plt.rcParams['figure.figsize'] = (12,8)

When it is not running, go to "Runtime" and click on "Restart and run all"

It will definitely work in google colab, but do not forget # when show- Proceed (Y/n)? Put Y and then enter

ras44 · 2023-07-12T16:45:48Z

The OP @g0odplayer00 describes not being able to run causalML in a Google Colab.

I am able to run !pip install causalml in a Google colab, but did have to fix numpy==1.23 and the restart the runtime.

For a working example, see:

https://colab.research.google.com/drive/1mVKxa5cKXZSLcnuEYGlvePhWPL00FH_E?usp=sharing

For other issues, like that described by @talhaanwarch, please make sure that you have gcc and g++ installed, for example:

sudo apt-get install -y gcc g++

Please note that colab currently run's python 3.10.12, which is not supported and which will break when attempting to run tests. Currently only py 3.7, 3.8, and 3.9 are supported.

jakirhasantalukder · 2023-07-14T02:44:57Z

Wonderful! From: ras44 ***@***.***> Sent: Thursday, 13 July 2023 2:16 AM To: uber/causalml ***@***.***> Cc: Talukder, Md Jakir Hasan - talmh001 ***@***.***>; Comment ***@***.***> Subject: Re: [uber/causalml] Unable to install causalml (Issue #609) The OP @g0odplayer00<https://github.com/g0odplayer00> describes not being able to run causalML in a Google Colab. I am able to run !pip install causalml in a Google colab, but did have to fix numpy==1.23 and the restart the runtime. For a working example, see: https://colab.research.google.com/drive/1mVKxa5cKXZSLcnuEYGlvePhWPL00FH_E?usp=sharing<https://colab.research.google.com/drive/1mVKxa5cKXZSLcnuEYGlvePhWPL00FH_E?usp=sharing> For other issues, like that described by @talhaanwarch<https://github.com/talhaanwarch>, please make sure that you have gcc and g++ installed, for example: sudo apt-get install -y gcc g++ — Reply to this email directly, view it on GitHub<#609 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AX3WNRENBTXIJZBTRXYI7ELXP3IERANCNFSM6AAAAAAWK5QQHE>. You are receiving this because you commented.Message ID: ***@***.******@***.***>>

vincewu51 · 2023-08-19T03:41:06Z

Closed since the issue is solved.

g0odplayer00 added the bug Something isn't working label Mar 28, 2023

ras44 mentioned this issue Jul 12, 2023

Consider GitHub workflows to monitor failing installation processes #636

Closed

ras44 mentioned this issue Jul 12, 2023

Installation updates to README and .github/workflows #637

Merged

10 tasks

vincewu51 closed this as completed Aug 19, 2023

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Unable to install causalml #609

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Unable to install causalml #609

Unable to install causalml #609

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jakirhasantalukder commented Jul 3, 2023

Initially run the following code:

when show- Proceed (Y/n)? Put Y and then enter

Then run-

When it is not running, go to "Runtime" and click on "Restart and run all"

It will definitely work in google colab, but do not forget # when show- Proceed (Y/n)? Put Y and then enter

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