173 cleanup

[zmorris248]

Overview

This PR enables full system deployment and functionality on Amazon Web Services (AWS) using the Elastic Kubernetes Service (EKS). It ensures that our application can operate seamlessly in a cloud environment, catering to the demands of scalable infrastructure.

Implementation

This implementation primarily focuses on configuring AWS systems, including network settings, service subnets, and other essential cloud components. Key updates include:

• Network Configuration: Setup of VPCs, subnets, and security groups to ensure secure and efficient network traffic.
• Script Modifications: Adjustments in deployment scripts to enhance performance and resolve minor issues.
• Orthanc-PACS Integration: System setup adjustments for internal Orthanc to communicate effectively with external third-party PACS systems.

Testing

Testing was conducted through comprehensive manual checks to validate the functionality of each component and the system as a whole. Specific focus areas included:

• Manual System Verification: Ensuring that all components work as expected within the AWS environment.
• Integration Testing: Checking the integration points, especially the connectivity between Orthanc and PACS systems, to verify data flow and functionality.

Problems Faced

Several challenges were encountered during the implementation, particularly with network connectivity and HTTPS protocol handling between Kubernetes pods. Key issues included:

• Proxy Network Issues: Difficulty in external system connectivity due to university proxy settings.
• Resolution: Implemented a simulated hospital PACS system on AWS to bypass the proxy limitations, ensuring reliable external communications.

This pull request lays the groundwork for a robust and scalable deployment of our system in a cloud environment, addressing past connectivity issues and streamlining operations.

[github-actions]

Jest Coverage

Summary

Lines	Statements	Branches	Functions
	73.27% (521/711)	56.8% (96/169)	65.74% (142/216)

Junit Summary

Tests	Skipped	Failures	Errors	Time
37	0 💤	0 ❌	0 🔥	3.833s ⏱️

Coverage Report (72%)

File	% Stmts	% Branch	% Funcs	% Lines	Uncovered Line #s
All files	73.27	56.8	65.74	72.08
fixtures	100	100	100	100
hospitalFixture.tsx	100	100	100	100
kidneyStudyFixture.tsx	100	100	100	100
providerFixture.tsx	100	100	100	100
src/components	90.99	44.44	89.65	91.17
ErrorMessageBox.tsx	100	100	100	100
EventTimeline.tsx	71.42	0	0	75	79–83
Metadata.tsx	85.71	0	80	84.61	74–75
Navbar.tsx	90.47	50	100	90	150, 163
StackedChart.tsx	100	66.66	100	100	72–85
withAuthenticated.tsx	100	100	100	100
src/contexts	90	100	58.33	89.28
authContext.tsx	90	100	58.33	89.28	72, 90, 104
src/data	30.93	15.38	33.87	20
index.ts	30.93	15.38	33.87	20	17–27, 38–48, 59–69, 80–90, 98–108, 118–128, 140–149, 161–171, 181–190, 200–205, 217–240, 251–259, 269–274, 287–326, 335–345, 355–365, 370–380, 385–395, 411–412
src/hooks	100	100	100	100
useAuthContext.ts	100	100	100	100
src/pages	81.72	67.27	80.39	82.01
analytics.tsx	96.15	100	88.88	96	90
dashboard.tsx	100	100	100	100
index.tsx	100	100	100	100
login.tsx	83.87	88.88	85.71	83.33	52–57, 109
profile.tsx	77.5	61.53	80	80.55	59–61, 83–86
signup.tsx	71.62	55.55	66.66	71.23	89–91, 98–100, 116–140, 224–231, 270–287
src/pages/apikeys	73.21	54.54	64.28	71.69
index.tsx	73.21	54.54	64.28	71.69	74–77, 89, 94–99, 104–108, 195
src/pages/studies	79.31	57.14	72.97	81.34
[id].tsx	69.01	37.5	57.89	71.87	85, 94–108, 112–114, 125–126, 130, 134, 143, 219
index.tsx	89.18	71.87	88.88	90	49, 64, 111, 120, 127, 141, 149

[sonarqubecloud]

Quality Gate passed

Issues
19 New issues
11 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
50.5% Duplication on New Code

See analysis details on SonarCloud

[powersaudrey25]

fantastic work thanks guys!