run package msbuild updates

xieguigang · Nov 18, 2024 · 66d88d4 · 66d88d4
1 parent d1b863d
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diff --git a/Rscript/Library/mzkit_app/@export/massbank.d.ts b/Rscript/Library/mzkit_app/@export/massbank.d.ts
@@ -111,6 +111,12 @@ declare namespace massbank {
      * + default value Is ``null``.
    */
    function lipidmaps_id(lipidmaps: any, env?: object): any;
+   /**
+    * load compounds from herbs database
+    * 
+    * 
+   */
+   function load_herbs(repo: string): object;
    /**
     * construct a new metabolite annotation information data
     * 

diff --git a/Rscript/Library/mzkit_app/man/mzkit/massbank/massbank.md b/Rscript/Library/mzkit_app/man/mzkit/massbank/massbank.md
@@ -28,3 +28,4 @@ Metabolite annotation database toolkit
 + [rankingNames](massbank/rankingNames.1) Ranking a set of the given synonym string collection for find common name.
 + [metabo_anno](massbank/metabo_anno.1) construct a new metabolite annotation information data
 + [inchikey](massbank/inchikey.1) generates the inchikey hashcode based on the given inchi data
++ [load_herbs](massbank/load_herbs.1) load compounds from herbs database
diff --git a/Rscript/Library/mzkit_app/man/mzkit/massbank/massbank/load_herbs.1 b/Rscript/Library/mzkit_app/man/mzkit/massbank/massbank/load_herbs.1
@@ -0,0 +1,16 @@
+.\" man page create by R# package system.
+.TH MASSBANK 1 2000-Jan "load_herbs" "load_herbs"
+.SH NAME
+load_herbs \- load compounds from herbs database
+.SH SYNOPSIS
+\fIload_herbs(\fBrepo\fR as string);\fR
+.SH DESCRIPTION
+.PP
+load compounds from herbs database
+.PP
+.SH SEE ALSO
+massbank
+.SH FILES
+.PP
+mzkit.dll
+.PP
diff --git a/...rary/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_ingredient_info.html b/...rary/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_ingredient_info.html
@@ -0,0 +1,67 @@
+<!DOCTYPE html>
+<html>
+
+<head>
+    <title>BioNovoGene.BioDeep.Chemistry.HERB.HERB_ingredient_info</title>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+    <link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css">
+</head>
+
+<body>
+    <div class="container">
+
+        <table style="width: 100%;">
+            <tr>
+                <td>HERB_ingredient_info {BioNovoGene.BioDeep.Chemistry.HERB}</td>
+                <td style="text-align: right;">.NET clr documentation</td>
+            </tr>
+        </table>
+
+        <h2>HERB_ingredient_info</h2>
+
+        <h3>Description</h3>
+
+
+
+        <h3>Declare</h3>        
+
+        <pre>
+            <code id="clr_ts">
+# namespace BioNovoGene.BioDeep.Chemistry.HERB
+export class HERB_ingredient_info {
+   Alias: string;
+   CAS_id: string;
+   DrugBank_id: string;
+   Ingredient_formula: string;
+   Ingredient_id: string;
+   Ingredient_name: string;
+   Ingredient_Smile: string;
+   Ingredient_weight: string;
+   OB_score: string;
+   PubChem_id: string;
+   SymMap_id: string;
+   TCM_ID_id: string;
+   TCMID_id: string;
+   TCMSP_id: string;
+}
+</code>
+        </pre>
+
+        <h3>.NET clr type reference tree</h3>
+
+        this clr type has no other .net clr type reference.
+
+
+        <hr />
+        <div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a
+                href="../{$package}.html">Index</a>]
+        </div>
+    </div>
+</body>
+
+<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script>
+<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script>
+<script type="text/javascript">r_highlights("clr_ts");</script>
+
+</html>
diff --git a/...brary/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_reference_info.html b/...brary/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_reference_info.html
@@ -0,0 +1,68 @@
+<!DOCTYPE html>
+<html>
+
+<head>
+    <title>BioNovoGene.BioDeep.Chemistry.HERB.HERB_reference_info</title>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+    <link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css">
+</head>
+
+<body>
+    <div class="container">
+
+        <table style="width: 100%;">
+            <tr>
+                <td>HERB_reference_info {BioNovoGene.BioDeep.Chemistry.HERB}</td>
+                <td style="text-align: right;">.NET clr documentation</td>
+            </tr>
+        </table>
+
+        <h2>HERB_reference_info</h2>
+
+        <h3>Description</h3>
+
+
+
+        <h3>Declare</h3>        
+
+        <pre>
+            <code id="clr_ts">
+# namespace BioNovoGene.BioDeep.Chemistry.HERB
+export class HERB_reference_info {
+   Animal_Experiment: string;
+   Cell_Experiment: string;
+   Clinical_Experiment: string;
+   DOI: string;
+   Experiment_subject: string;
+   Experiment_type: string;
+   Herb_ingredient: string;
+   Herb_ingredient_id: string;
+   Herb_ingredient_name: string;
+   Journal: string;
+   Not_Mentioned: string;
+   Publish_Date: string;
+   PubMed_id: string;
+   REF_id: string;
+   Reference_title: string;
+}
+</code>
+        </pre>
+
+        <h3>.NET clr type reference tree</h3>
+
+        this clr type has no other .net clr type reference.
+
+
+        <hr />
+        <div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a
+                href="../{$package}.html">Index</a>]
+        </div>
+    </div>
+</body>
+
+<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script>
+<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script>
+<script type="text/javascript">r_highlights("clr_ts");</script>
+
+</html>
diff --git a/...ibrary/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HerbCompoundObject.html b/...ibrary/mzkit_app/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HerbCompoundObject.html
@@ -0,0 +1,71 @@
+<!DOCTYPE html>
+<html>
+
+<head>
+    <title>BioNovoGene.BioDeep.Chemistry.HERB.HerbCompoundObject</title>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+    <link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css">
+</head>
+
+<body>
+    <div class="container">
+
+        <table style="width: 100%;">
+            <tr>
+                <td>HerbCompoundObject {BioNovoGene.BioDeep.Chemistry.HERB}</td>
+                <td style="text-align: right;">.NET clr documentation</td>
+            </tr>
+        </table>
+
+        <h2>HerbCompoundObject</h2>
+
+        <h3>Description</h3>
+
+
+
+        <h3>Declare</h3>        
+
+        <pre>
+            <code id="clr_ts">
+# namespace BioNovoGene.BioDeep.Chemistry.HERB
+export class HerbCompoundObject extends <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_ingredient_info.html">HERB_ingredient_info</a> {
+   Alias: string;
+   CAS_id: string;
+   DrugBank_id: string;
+   Ingredient_formula: string;
+   Ingredient_id: string;
+   Ingredient_name: string;
+   Ingredient_Smile: string;
+   Ingredient_weight: string;
+   OB_score: string;
+   PubChem_id: string;
+   reference: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_reference_info.html">HERB_reference_info[]</a>;
+   SymMap_id: string;
+   TCM_ID_id: string;
+   TCMID_id: string;
+   TCMSP_id: string;
+}
+</code>
+        </pre>
+
+        <h3>.NET clr type reference tree</h3>
+
+        <ol>
+<li>this class extends from <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_ingredient_info.html">HERB_ingredient_info</a> class: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_ingredient_info.html">HERB_ingredient_info</a></li>
+<li>use by <i>property</i> member <code>reference</code>: <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HERB_reference_info.html">HERB_reference_info</a></li>
+</ol>
+
+
+        <hr />
+        <div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a
+                href="../{$package}.html">Index</a>]
+        </div>
+    </div>
+</body>
+
+<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script>
+<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script>
+<script type="text/javascript">r_highlights("clr_ts");</script>
+
+</html>
diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/massbank.html b/Rscript/Library/mzkit_app/vignettes/mzkit/massbank.html
@@ -271,6 +271,12 @@ <h1>massbank</h1>
     <a href="./massbank/inchikey.html">inchikey</a>
   </td>
   <td><p>generates the inchikey hashcode based on the given inchi data</p></td>
+</tr>
+<tr>
+  <td id="load_herbs">
+    <a href="./massbank/load_herbs.html">load_herbs</a>
+  </td>
+  <td><p>load compounds from herbs database</p></td>
 </tr></tbody>
       </table>
     </div>

diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/massbank/load_herbs.html b/Rscript/Library/mzkit_app/vignettes/mzkit/massbank/load_herbs.html
@@ -0,0 +1,67 @@
+<!DOCTYPE html>
+<html>
+
+<head>
+    <title>load compounds from herbs database</title>
+    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
+    <link rel="stylesheet" type="text/css" href="https://mzkit.org/assets/js/page.css">
+</head>
+
+<body>
+    <div class="container">
+
+        <table style="width: 100%;">
+            <tr>
+                <td>load_herbs {massbank}</td>
+                <td style="text-align: right;">R Documentation</td>
+            </tr>
+        </table>
+
+        <h2>load compounds from herbs database</h2>
+
+        <h3>Description</h3>
+
+
+
+        <h3>Usage</h3>
+
+        <div style="width: 100%; padding-left: 3%; color: black;">
+            <pre><code class='language-R' style="color: black; font-weight:normal;"><strong>load_herbs</strong>(<i>repo</i>);</code></pre>
+        </div>
+
+        <h3>Arguments</h3>
+
+        <table>
+
+        </table>
+
+
+        <h3 style="display: none;">Details</h3>
+
+
+
+        <h3 style="display: block">Authors</h3>
+
+        BioNovoGene
+
+        <h3>Value</h3>
+
+        this function returns data object of type <a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HerbCompoundObject.html">HerbCompoundObject</a>.<h4>clr value class</h4><ul><li><a href="/vignettes/clr/BioNovoGene/BioDeep/Chemistry/HERB/HerbCompoundObject.html">HerbCompoundObject</a></li></ul>
+
+        <h3 style="display: none;">Examples</h3>
+
+
+
+        <hr />
+        <div style="text-align: center;">[Package <em>massbank</em> version 1.0.0.0 <a
+                href="../massbank.html">Index</a>]
+        </div>
+    </div>
+</body>
+
+<script type="text/javascript" src="https://mzkit.org/assets/js/R_syntax.js"></script>
+<script type="text/javascript" src="https://mzkit.org/assets/js/highlights.js"></script>
+<script type="text/javascript">r_highlights("example_r");</script>
+
+</html>
diff --git a/src/mzkit b/src/mzkit