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@yelabucsf

Yelab @ UCSF

Computational and Experimental Genomics Lab

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  1. scrna-parameter-estimation scrna-parameter-estimation Public

    Direct estimation of mean and covariance from single cell RNA seq experiments

    Jupyter Notebook 95 9

  2. SCITO-seq_Manuscript SCITO-seq_Manuscript Public

    SCITO-seq manuscript related

    Jupyter Notebook 8 3

  3. lupus_1M_cells_clean lupus_1M_cells_clean Public

    Jupyter Notebook 6 1

  4. demuxlet_paper_code demuxlet_paper_code Public

    Supplementary code for generating some of the figures presented in the demuxlet paper

    R 5 5

  5. Cas9_chromosome_loss_scRNA-seq Cas9_chromosome_loss_scRNA-seq Public

    Jupyter Notebook 2 1

  6. spatial spatial Public

    spatial sequencing project @ Ye lab

    Jupyter Notebook 1

Repositories

Showing 10 of 17 repositories
  • scrna-parameter-estimation Public

    Direct estimation of mean and covariance from single cell RNA seq experiments

    yelabucsf/scrna-parameter-estimation’s past year of commit activity
    Jupyter Notebook 95 MIT 9 19 4 Updated Jan 24, 2025
  • dna-xformers-yelab Public

    DNA sequence modeling using transformers and deep learning approaches

    yelabucsf/dna-xformers-yelab’s past year of commit activity
    Python 0 0 0 0 Updated Dec 2, 2024
  • P2RY8_DMS Public
    yelabucsf/P2RY8_DMS’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 19, 2024
  • SKG_rheum Public
    yelabucsf/SKG_rheum’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 15, 2024
  • Cas9_chromosome_loss_scRNA-seq Public
    yelabucsf/Cas9_chromosome_loss_scRNA-seq’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Aug 29, 2023
  • clue Public

    Analysis code for the clue framework paper: efficient pooled single-cell sequencing without reference genotypes.

    yelabucsf/clue’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 19, 2023
  • obesity_scrnaseq Public
    yelabucsf/obesity_scrnaseq’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 20, 2022
  • scito Public

    Python/C packade for SCITO-seq analysis in Jupyter notebooks

    yelabucsf/scito’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 28, 2021
  • spatial Public

    spatial sequencing project @ Ye lab

    yelabucsf/spatial’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 28, 2020
  • ImmunoX_hack Public

    Instructions for setting up environment for scRNA-seq analysis

    yelabucsf/ImmunoX_hack’s past year of commit activity
    0 0 0 0 Updated Sep 9, 2020
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