Tensorflow test

yuqiyuqitan · Jan 4, 2025 · 34e5685 · 34e5685
1 parent b57336e
commit 34e5685
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Showing 6 changed files with 58 additions and 3 deletions.
diff --git a/requirements-deepcell-mac-arm64_tf210-metal.txt b/requirements-deepcell-mac-arm64_tf210-metal.txt
@@ -0,0 +1,27 @@
+cellpose==3.0.8
+
+# Things we need dependencies for
+# smart_open[gcs]
+
+# DeepCell requirements
+deepcell-toolbox>=0.12.1
+deepcell-tracking~=0.6.5
+# scikit-learn>=0.20.4
+# tensorflow_addons~=0.16.1
+# spektral~=1.0.4
+jupyterlab
+
+# added for basic SPACEc functionality
+leidenalg
+louvain
+matplotlib
+# Protobuf version override needed because
+# the older packages have older compiled protobufs…
+protobuf<3.20
+pydot==1.4.2
+scikit-image>=0.19.3
+scipy>=1.2.3,<2
+spektral
+
+tensorflow-macos==2.10.0
+tensorflow-metal==0.6.0
diff --git a/requirements-deepcell-mac-arm64_tf210.txt b/requirements-deepcell-mac-arm64_tf210.txt
@@ -24,4 +24,3 @@ scipy>=1.2.3,<2
 spektral
 
 tensorflow-macos==2.10.0
-tensorflow-metal==0.6.0
diff --git a/requirements-deepcell-mac-arm64_tf213.txt b/requirements-deepcell-mac-arm64_tf213.txt
@@ -0,0 +1,27 @@
+cellpose==3.0.8
+
+# Things we need dependencies for
+# smart_open[gcs]
+
+# DeepCell requirements
+deepcell-toolbox>=0.12.1
+deepcell-tracking~=0.6.5
+# scikit-learn>=0.20.4
+# tensorflow_addons~=0.16.1
+# spektral~=1.0.4
+jupyterlab
+
+# added for basic SPACEc functionality
+leidenalg
+louvain
+matplotlib
+# Protobuf version override needed because
+# the older packages have older compiled protobufs…
+# protobuf<3.20
+pydot==1.4.2
+scikit-image>=0.19.3
+scipy>=1.2.3,<2
+spektral
+
+tensorflow-macos==2.13.0
+# tensorflow
diff --git a/requirements-deepcell-mac-arm64_tf28.txt → ...rements-deepcell-mac-arm64_tf28-metal.txt b/requirements-deepcell-mac-arm64_tf28.txt → ...rements-deepcell-mac-arm64_tf28-metal.txt
diff --git a/tests/test_0_qptiff_converter.py b/tests/test_0_qptiff_converter.py
@@ -4,7 +4,7 @@
 TEST_DIR = pathlib.Path(__file__).parent
 
 
-def test_cell_segmentation():
+def test_qptiff_converter():
     import matplotlib
 
     matplotlib.use("Agg")

diff --git a/tests/test_6_patch_proximity_analysis.py b/tests/test_6_patch_proximity_analysis.py
@@ -1,9 +1,11 @@
 import pathlib
-from tempfile import TemporaryDirectory
+
+import pytest
 
 TEST_DIR = pathlib.Path(__file__).parent
 
 
+@pytest.mark.slow
 def test_6_patch_proximity_analysis():
     # Set up environment
     import matplotlib
Original file line number	Diff line number	Diff line change
Expand Up		@@ -24,4 +24,3 @@ scipy>=1.2.3,<2
		spektral

		tensorflow-macos==2.10.0
		tensorflow-metal==0.6.0