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update docker message
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yuqiyuqitan committed Jul 1, 2024
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12 changes: 5 additions & 7 deletions README.md
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Expand Up @@ -33,17 +33,15 @@ pip install spacec
Example tonsil data on [dryad](https://datadryad.org/stash/share/OXTHu8fAybiINGD1S3tIVUIcUiG4nOsjjeWmrvJV-dQ)

### Docker
If you run into installation issue or don't want to deal with installation issue, we have created a docker environment for you to use SPACEc so that you don't have to instll from sratch.
SPACEc Docker image: https://hub.docker.com/repository/docker/tkempchen/spacec/general
If you run into an installation issue or want to run SPACEc in a containerized environment, we have created a Docker image for you to use SPACEc so that you don't have to install manually. You can find the SPACEc Docker image here: https://hub.docker.com/repository/docker/tkempchen/spacec/general

```bash
# pull the SPACEc docker image
docker pull tkempchen/spacec:cpu #(or gpu)

#Run CPU version:
#Run CPU version:
docker pull tkempchen/spacec:cpu
docker run -p 8888:8888 -p 5100:5100 spacec:cpu

#Or run GPU version:
#Or run GPU version:
docker pull tkempchen/spacec:gpu
docker run --gpus all -p 8888:8888 -p 5100:5100 spacec:gpu
```

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