Merge pull request #371 from DEploid-dev/rversion_update

expose randomseed

.github/workflows/ccpp.yml

@@ -126,7 +126,7 @@ jobs:
 #  See: https://github.com/marketplace/actions/coveralls-github-action
     - name: Coveralls
       if: matrix.name == 'ubuntu-gcc-9'
-      uses: coverallsapp/github-action@v1.1.2
+      uses: coverallsapp/github-action@v2.3.4
       with:
         github-token: ${{ secrets.GITHUB_TOKEN }}
       #run: coveralls --exclude lib --exclude tests --exclude src/random --exclude src/codeCogs/ --exclude src/export/ --exclude src/gzstream/ --gcov-options '\-lp'

src/dEploidIO.cpp

@@ -749,7 +749,6 @@ void DEploidIO::readPanel() {
 DEploidIO::DEploidIO(const DEploidIO &cpFrom) {
     this->setIsCopied(true);
     this->setDoExportRecombProb(cpFrom.doExportRecombProb());
-    //this->setrandomSeedWasGiven(cpFrom.randomSeedWasGiven());
     this->setCompressVcf(cpFrom.compressVcf());
     this->setInitialPropWasGiven(cpFrom.initialPropWasGiven());
     this->setInitialHapWasGiven(cpFrom.initialHapWasGiven());

src/dEploidIO.hpp

@@ -140,6 +140,10 @@ class DEploidIO{
     void workflow_ibd();
     void workflow_best();
 
+    // Make this public so it is also accessible from
+    Parameter <size_t> randomSeed_;
+    bool randomSeedWasSet() const {return this->randomSeed_.useUserDefined(); }
+
   private:
     void setBestPracticeParameters();
     void core();
@@ -233,7 +237,6 @@ class DEploidIO{
     Parameter <size_t> kStrain_;
     Parameter <size_t> precision_;
     Parameter <size_t> nMcmcSample_;
-    Parameter <size_t> randomSeed_;
     Parameter <size_t> mcmcMachineryRate_;
     Parameter <double> mcmcBurn_;