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User-Defined Linear Map#743

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cemitch99 wants to merge 39 commits intoECP-WarpX:developmentECP-WarpX/impactx:developmentfrom cemitch99:topic-covariance-and-transport-mapscemitch99/impactx:topic-covariance-and-transport-mapsCopy head branch name to clipboard

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Commits on Sep 24, 2024

• [Draft] Transport and Covariance Matrices

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Commits on Sep 25, 2024

• Update InitElement.cpp

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• Update LinearMap.H

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Commits on Sep 26, 2024

• Update InitDistribution.cpp

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• Add Drift return linear map.

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Commits on Sep 27, 2024

• Use LinearMap struct in Drift.H.

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Commits on Oct 10, 2024

• Merge branch 'development' into topic-covariance-and-transport-maps

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Commits on Oct 11, 2024

• Merge remote-tracking branch 'mainline/development' into topic-covariance-and-transport-maps

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• Transport/Covariane: Use SmallMatrix

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Commits on Oct 15, 2024

• Add Python bindings for LinearMap element.

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• Update elements.cpp

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• Update elements.cpp

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Commits on Oct 23, 2024

• Update elements.cpp

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Commits on Nov 2, 2024

• Add LinearMap to 'Named' elements.

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• Update LinearMap.H

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• Modify LinearMap Python bindings.

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Commits on Nov 5, 2024

• Update src/initialization/InitDistribution.cpp

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• Update src/initialization/InitDistribution.cpp

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Commits on Nov 20, 2024

• Update InitDistribution.cpp

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Commits on Jan 6, 2025

• Leftover Improvements from first PR

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• Finalize Python

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• More Detailed Warning

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• Start Examples

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• Start Documentation

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• Fix Bugs (incl. AMReX)

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• Docs Updates

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Commits on Jan 10, 2025

• Merge remote-tracking branch 'mainline/development' into topic-covariance-and-transport-maps-chad

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• LinearMap: ds bookkeeping

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Commits on Jan 12, 2025

• Add thin linear map example.

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Document example README.

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• Update run_map.py

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• Update run_map.py

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• Update run_map.py

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• Update input_map.in

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• Apply suggestions from code review

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