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Issues list

cellxgene-schema CLI must validate Drosophila melanogaster 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1203 opened Jan 24, 2025 by brianraymor
cellxgene-schema CLI must validate Danio rerio 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1202 opened Jan 24, 2025 by brianraymor
cellxgene-schema CLI must validate Caenorhabditis elegans 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1201 opened Jan 24, 2025 by brianraymor
@ejmolinelli
Validator outputs misleading errors when NaN values are in required Visium .obs columns curation software
#1196 opened Jan 23, 2025 by Jchaffer787
cellxgene-schema CLI must update validation for obs['assay_ontology_term_id'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1189 opened Jan 23, 2025 by brianraymor
Draft requirements for term labels that appear in both taxon specific ontologies and taxon neutral ontologies multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1186 opened Jan 22, 2025 by brianraymor
@brianraymor
re-curate non-human/-mouse data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1182 opened Jan 22, 2025 by jahilton
@jahilton
re-curate ATAC data for schema 5.3 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1181 opened Jan 21, 2025 by jahilton
@jahilton
Add breed for small set of "livestock" species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1180 opened Jan 21, 2025 by brianraymor
@brianraymor
BUG: scipy 1.15.0 breaking validation bug Something isn't working tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1165 opened Jan 7, 2025 by Bento007
Draft Gallus gallus (chicken) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1159 opened Dec 19, 2024 by brianraymor
@brianraymor
cellxgene-schema CLI must update validation for X and raw.X 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1158 opened Dec 19, 2024 by brianraymor
@ejmolinelli
2
Draft Bos taurus (Cow) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1156 opened Dec 18, 2024 by brianraymor
@brianraymor
[BUG] Bone marrow cell annotation in Tabula Muris Senis 10x bug Something isn't working curation Updates to published datasets
#1151 opened Dec 10, 2024 by bfurtwa
4
add clarity to document and tests to enforce categorical datatypes with string/object values. curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1146 opened Dec 3, 2024 by ejmolinelli
move stateful checks (e.g. is_visium, is_single) higher up in the validator to avoid potential state-related issues curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1125 opened Nov 21, 2024 by ejmolinelli
5 tasks
cellxgene-schema CLI must add validation for obs['genetic_ancestry_*'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1114 opened Nov 18, 2024 by brianraymor
@joyceyan
4
bug: anndata 0.11.0 breaking CLI bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1096 opened Nov 14, 2024 by Bento007
Human Brain Cell Atlas - revise cell_type annotation curation Updates to published datasets
#1093 opened Nov 13, 2024 by jahilton
@jahilton
1
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data'] bug Something isn't working curation software dp Data Platform Team work
#1076 opened Oct 30, 2024 by brianraymor
1
Breaking change: one organism per dataset with matching feature reference 6.0 Next major CELLxGENE schema version multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1074 opened Oct 28, 2024 by brianraymor
@brianraymor
5
Discovery for Productionalizing Multi-Species Validator Epic
#1058 opened Oct 22, 2024 by nayib-jose-gloria
Investigate integrating a more flexible, established third-party validation tool P1
#1055 opened Oct 22, 2024 by nayib-jose-gloria
Package experimental validator CLI such that user can easily install + validate against their desired schema
#1054 opened Oct 22, 2024 by nayib-jose-gloria
Dataset MUST NOT contain duplicate obs, by raw counts 5.4 Next minor CELLxGENE schema version after 5.3 schema CELLxGENE Discover dataset schema
#1037 opened Oct 17, 2024 by jahilton
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