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Cbioportal#11

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jessicaw9910 merged 11 commits intomainchoderalab/missense-kinase-toolkit:mainfrom cbioportalchoderalab/missense-kinase-toolkit:cbioportalCopy head branch name to clipboardApr 3, 2024

+1,456-166

Commits

Commits on Feb 21, 2024

• added cbioportal, pfam, and utils_requests; ran black and flake8 on everything in src for the first time

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Commits on Apr 2, 2024

• modififed cbioportal, pfam, and requests script; udpated from provision-with-micromamba to mamba-org/setup-micromamba

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• Merge branch 'main' into cbioportal

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• ran chmod -x src/__init__.py per pre-commit.ci

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• updating cBioPortals to include token access cohorts, initializing data models

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Commits on Apr 3, 2024

• cbioportal now an executable that can extract clinical sequencing cohort; added kinhub scraper and io_utils; data_models TODO

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• data and request cache directories to .gitignore, udpated poetry for new packages

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