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Add INN synonym type #150

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merged 7 commits into from
Oct 12, 2023
Merged

Add INN synonym type #150

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8a5e510
Add INN synonym type
cthoyt Sep 30, 2023
2801a7e
Fix issue links
cthoyt Sep 30, 2023
619ddab
Update annotation_properties.tsv
cthoyt Oct 3, 2023
1a6c98b
Update omo-to-external.tsv
cthoyt Oct 8, 2023
a6ce062
Update annotation_properties.tsv
cthoyt Oct 8, 2023
9049c8b
Update annotation_properties.tsv
cthoyt Oct 8, 2023
a8e058c
Merge branch 'master' into chemical-synonyms
matentzn Oct 12, 2023
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2 changes: 2 additions & 0 deletions src/ontology/components/omo-to-external.tsv
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Expand Up @@ -8,6 +8,7 @@
# UBERON_CORE_HASH: "http://purl.obolibrary.org/obo/uberon/core#"
# FOVT_HASH: "http://purl.obolibrary.org/obo/fovt#"
# MONDO_HASH: "http://purl.obolibrary.org/obo/mondo#"
# CHEBI_HASH: "http://purl.obolibrary.org/obo/chebi#"
subject_id subject_label predicate_id object_id object_label notes mapping_justification author_id
OMO:0003000 abbreviation owl:equivalentProperty HP_HASH:abbreviation abbreviation . semapv:ManualMappingCuration
OMO:0003003 layperson synonym owl:equivalentProperty HP_HASH:layperson layperson . semapv:ManualMappingCuration
Expand All @@ -18,3 +19,4 @@ OMO:0003006 misspelling owl:equivalentProperty UBERON_CORE_HASH:MISSPELLING miss
OMO:0003006 misspelling owl:equivalentProperty FOVT_HASH:misspelling misspelling . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370
OMO:0003006 misspelling owl:equivalentProperty MONDO_HASH:MISSPELLING misspelling . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370
OMO:0003007 misnomer owl:equivalentProperty NCBITaxon_HASH:misnomer misnomer . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370
OMO:0003010 International Nonproprietary Name owl:equivalentProperty CHEBI_HASH:INN INN . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370
1 change: 1 addition & 0 deletions src/templates/annotation_properties.tsv
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Expand Up @@ -10,3 +10,4 @@ OMO:0003006 owl:AnnotationProperty misspelling A synonym type for common misspel
OMO:0003007 owl:AnnotationProperty misnomer A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-03-03 https://github.com/information-artifact-ontology/ontology-metadata/issues/133
OMO:0003008 owl:AnnotationProperty previous name A synonym type for names that have been used as primary labels in the past. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-25 MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol. https://github.com/information-artifact-ontology/ontology-metadata/issues/139
OMO:0003009 owl:AnnotationProperty legal name A synonym type for the legal entity name oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-27 The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College https://github.com/information-artifact-ontology/ontology-metadata/issues/141
OMO:0003010 owl:AnnotationProperty International Nonproprietary Name The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-09-30 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) ""paracetamol"". In some cases such as this one, the INN might be the same as the ontology's primary label" https://github.com/information-artifact-ontology/ontology-metadata/issues/149