Fixes #2875 NTR-granzyme H-associated CD8 T cell

[Caroline-99]

• Added a new term with textual and logical defs and references

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-10/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-10/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

PR_000003490 http://purl.obolibrary.org/obo/PR_000003490

Added

• Class: PR_000003490

granzyme H-associated CD8 T cell http://purl.obolibrary.org/obo/CL_4052032

Added

• granzyme H-associated CD8 T cell hasExactSynonym "granzyme H+ CD8 T cell"

  • hasDbXref "PMID:35389781"

• granzyme H-associated CD8 T cell contributor 0000-0002-3958-7465

• granzyme H-associated CD8 T cell hasRelatedSynonym "GZMH+ CD8+ T cell"

  • hasSynonymType OMO_0003000

  • hasDbXref "PMID:35389781"

• granzyme H-associated CD8 T cell date "2025-01-10T10:14:31Z"^^dateTime

• granzyme H-associated CD8 T cell IAO_0000115 "A CD8 T cell characterized by high expression of Granzyme H (GZMH), significantly expanded in systemic lupus erythematosus (SLE) patients. This cell exhibits a restricted TCR repertoire and elevated expression of cytotoxic, exhaustion, and type I interferon-stimulated gene signatures compared to controls. Unlike other CD8 T cell populations, GZMH+ CD8 T cells can comprise up to 50% of all lymphocytes in some SLE patients."

  • hasDbXref "PMID:35389781"

• granzyme H-associated CD8 T cell contributor 0009-0000-8480-9277

• granzyme H-associated CD8 T cell label "granzyme H-associated CD8 T cell"

• Class: granzyme H-associated CD8 T cell

• granzyme H-associated CD8 T cell EquivalentTo CD8-positive, alpha-beta memory T cell and (RO_0002292 some PR_000003490)

• granzyme H-associated CD8 T cell SubClassOf RO_0002292 some PR_000003490

• granzyme H-associated CD8 T cell SubClassOf CD8-positive, alpha-beta memory T cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

PR_000003490 http://purl.obolibrary.org/obo/PR_000003490

Added

• Class: PR_000003490

granzyme H-associated CD8 T cell http://purl.obolibrary.org/obo/CL_4052032

Added

• granzyme H-associated CD8 T cell has_exact_synonym "granzyme H+ CD8 T cell"

  • database_cross_reference "PMID:35389781"

• granzyme H-associated CD8 T cell label "granzyme H-associated CD8 T cell"

• granzyme H-associated CD8 T cell contributor 0000-0002-3958-7465

• granzyme H-associated CD8 T cell has_related_synonym "GZMH+ CD8+ T cell"

  • database_cross_reference "PMID:35389781"

  • has_synonym_type abbreviation

• granzyme H-associated CD8 T cell date "2025-01-10T10:14:31Z"^^dateTime

• granzyme H-associated CD8 T cell definition "A CD8 T cell characterized by high expression of Granzyme H (GZMH), significantly expanded in systemic lupus erythematosus (SLE) patients. This cell exhibits a restricted TCR repertoire and elevated expression of cytotoxic, exhaustion, and type I interferon-stimulated gene signatures compared to controls. Unlike other CD8 T cell populations, GZMH+ CD8 T cells can comprise up to 50% of all lymphocytes in some SLE patients."

  • database_cross_reference "PMID:35389781"

• granzyme H-associated CD8 T cell contributor 0009-0000-8480-9277

• Class: granzyme H-associated CD8 T cell

• granzyme H-associated CD8 T cell EquivalentTo CD8-positive, alpha-beta memory T cell and (expresses some PR_000003490)

[aleixpuigb]

Everything looks good, but I would wait to merge until the PR ID is in the PRO obo slim.