Repositories list

• heavens-docker

  Public
  Repository for all of the KPMP docker containers and docker-compose scripts

  dockerdocker-compose

  Shell

  •0•2•0•0•Updated Jan 22, 2025Jan 22, 2025

• libra-data

  Public
  Tools supporting the Data Manager Dashboard (DMD)

  data-managementdmddata-manater-dashboard

  Python

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• hubble-web

  Public
  Contains the KPMP Atlas Spatial Viewer

  spatialatlasspatial-viewer

  JavaScript

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• redcap-omop-etl

  Public
  ETL scripts to transform REDCap data into the OMOP CDM

  Python

  •0•3•0•1•Updated Jan 13, 2025Jan 13, 2025

• scutum

  Public
  Auth service for KPMP DVC applications.

  Java

  •1•0•0•1•Updated Jan 13, 2025Jan 13, 2025

• delphinus-web

  Public
  This project is the web front-end for the Digital Pathology Repository for the Kidney Precision Medicine Project.

  dpr

  JavaScript

  •1•1•0•6•Updated Jan 13, 2025Jan 13, 2025

• hydra-web

  Public
  This is the front-end code for the KPMP data repository.

  JavaScript

  •0•1•0•0•Updated Jan 9, 2025Jan 9, 2025

• orion-data

  Public
  Service layer for the data lake upload tool for KPMP

  dludatalake-uploader

  Java

  •2•3•0•1•Updated Jan 8, 2025Jan 8, 2025

• pegasus-web

  Public
  Repository for the Atlas Explorer tool

  exploreratlas

  JavaScript

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• pegasus-data

  Public
  Repository for the Atlas Explorer Tool service layer

  exploreratlas

  Java

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• hydra-data

  Public
  Gives us an endpoint to get the data back to load into ES for the KPMP data repository

  Java

  •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

• hubble-data

  Public
  Gives us an endpoint to get the data back to load into ES for Spatial Viewer

  Java

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• wsi-worker

  Public
  A containerized worker to convert WSI slides in SVS format to DZI

  dprwsiparticipant-portal

  Python

  •1•2•0•0•Updated Dec 16, 2024Dec 16, 2024

• kpmp-common-components

  Public
  KPMP's common set of cross application react componenets

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• delphinus-data

  Public
  Service layer for the Digital Pathology Repository for the Kidney Precision Medicine Project.

  dpr

  Java

  •1•1•0•6•Updated Dec 2, 2024Dec 2, 2024

• orion-web

  Public
  UI layer for the data lake uploader for KPMP

  dludatalake-uploader

  JavaScript

  •3•2•0•1•Updated Nov 21, 2024Nov 21, 2024

• atlas-file-service

  Public
  Service that provides files for the KPMP Atlas

  atlasknowledge-environment

  Python

  •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• stateManagerService

  Public
  The state manager service will do the work to keep track of the state of packages as they travel from the data lake to the knowledge environment.

  Java

  •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• libra-web

  Public
  UI layer for the data manager dashboard for KPMP

  JavaScript

  •0•0•0•1•Updated Oct 21, 2024Oct 21, 2024

• eridanus-data

  Public
  Service layer for the notification service for KPMP

  Java

  •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• cassiopeia-web

  Public
  Repo to store the front-end code for the Participant Whole Slide Image Viewer

  wsimydataparticipant-portal

  JavaScript

  •0•2•0•3•Updated Aug 31, 2024Aug 31, 2024

• kpmp-common-styles

  Public
  The stylesheets used across the KPMP applications

  csssassscss

  SCSS

  •

  MIT License

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• cassiopeia-data

  Public
  Service layer for the participant whole slide image viewer

  wsimydataparticipant-portal

  Java

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• KTAO

  Public
  KTAO stands for the Kidney Tissue Atlas Ontology

  3•5•5•0•Updated Mar 16, 2024Mar 16, 2024

• Cell-State-Atlas-2022

  Public
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney

  Jupyter Notebook

  •

  MIT License

  •5•14•2•0•Updated Mar 7, 2024Mar 7, 2024

• garden-data

  Public
  Place for service layer spikes

  Java

  •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• gisch-et-al-2023

  Public
  JavaScript

  •0•1•0•0•Updated Jul 18, 2023Jul 18, 2023

• atlas-index-creation-worker

  Public archive
  atlasknowledge-environment

  Python

  •0•0•0•0•Updated Jul 6, 2023Jul 6, 2023

• norma

  Public
  Repository to hold the json documents and generator for dynamic forms in orion

  dludatalake-uploader

  Java

  •0•1•0•0•Updated Jul 6, 2023Jul 6, 2023

• portal-ui

  Public archive
  Data Portal Front End

  repositoryatlas

  JavaScript

  •

  Apache License 2.0

  •19•0•0•0•Updated May 30, 2023May 30, 2023