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tanubrata/README.md

Hey there! My name is Tanubrata.

LinkedIn X

About me

PhD Student @ CUNY Grad Center | NYU '23 | Hunter College '20

πŸ’Ό Former Bioinformatics Analyst at mskilab mskilab-org at NYU Langone Health.

🧬 I am passionate about Bioinformatics and Genomics, with a strong interest in using programming to simplify and enhance research workflows.

πŸ€– I have some experience with Machine Learning (ML) and Large Language Models (LLMs) and am eager to deepen my knowledge in these areas.

🎯 My long-term goal is to integrate genomics and AI-driven predictive modeling in impactful research.

πŸ™‚ I am always eager and open to new opportunities and collaborations!


πŸ› οΈ Programming Languages

Python R C++ MATLAB Groovy

πŸ“Š Data Visualization

Matplotlib Seaborn ggplot Jupyter GraphPad Prism Cytoscape

πŸ“€ Databases

AWS SQLite MySQL

🌱 Bioinformatics Tools

BioGRID BLAST Bioconductor UCSC Genome Browser FASTQC MultiQC Bowtie HISAT2 STAR Salmon Kallisto GATK BWA Samtools Bcftools Picard DESeq2 EdgeR MACS2 HOMER JaBbA SvABA GRIDSS DAVID GSEA ClusterProfiler Reactome

πŸ‘€ Version Control & Workflow Management

Nextflow GitHub

✨ Software/Editor

Visual Studio Code Emacs Markdown Vim

πŸ’» Computing

Linux HPC AWS AWS S3 Bucket Docker Singularity

Pinned Loading

  1. Applied-Genomics Applied-Genomics Public

    Β© 2021 Tanubrata Dey. All Rights Reserved.

    HTML

  2. C-plus-plus-Programming C-plus-plus-Programming Public

    Β© 2020 Tanubrata Dey. All Rights Reserved.

    C++

  3. mskilab-org/nf-casereports mskilab-org/nf-casereports Public

    End to end cancer genomics pipeline

    Nextflow 1

  4. mskilab-org/nf-jabba mskilab-org/nf-jabba Public

    R 13 3

  5. Databases-and-Datamining Databases-and-Datamining Public

    HTML

  6. Machine-Learning Machine-Learning Public

    Β© 2021 Tanubrata Dey. All Rights Reserved.

    Jupyter Notebook