Issues: NorwegianVeterinaryInstitute/DemultiplexRawSequenceData
Issues list
feature request: check for the termcolor python library when starting script
enhancement
New feature or request
#99
opened Dec 29, 2024 by
georgemarselis-nvi
bug: $RunID_demultiplex/zip.zip ?
bug
Something isn't working
#97
opened Dec 22, 2024 by
georgemarselis-nvi
feature request: read files per project and use fastqc/multiqc in parallel using map()
enhancement
New feature or request
#94
opened Dec 15, 2024 by
georgemarselis-nvi
bug: cut out the /data/for_transfer part,or find another way for the checksum to succeed when using md5sumc -c *md5
bug
Something isn't working
#93
opened Dec 15, 2024 by
georgemarselis-nvi
test: check if for_transfer/*.md5/*.sha512 file is correct
testing
These here are tests
#92
opened Dec 15, 2024 by
georgemarselis-nvi
test: check if the structure of the md5/sha512 file is correct
testing
These here are tests
#91
opened Dec 15, 2024 by
georgemarselis-nvi
test: check if resuling md5/sha512 file corresponds to the output file
testing
These here are tests
#90
opened Dec 15, 2024 by
georgemarselis-nvi
bug: chmoding files: all/all/all ???
documentation
Improvements or additions to documentation
non-issue
not an issue after all
#89
opened Dec 9, 2024 by
georgemarselis-nvi
feature request: If 240126_M06578_0189_000000000-LCLVV_demultiplex\Reports\html\index.html reports zero reads, warn users of error with sample
enhancement
New feature or request
#81
opened Apr 11, 2024 by
georgemarselis-nvi
test: check that the outputted hash files pass the md5sum -c / sha512sum -c sniff test
testing
These here are tests
#80
opened Oct 23, 2023 by
georgemarselis-nvi
feature request: detect when a run needs to be demultiplexed as single lane
enhancement
New feature or request
#79
opened Oct 17, 2023 by
georgemarselis-nvi
test: check that the calculated hashlib.md5 and hashlib.sha512 are 128 and 64 bytes respectively
testing
These here are tests
#78
opened Sep 22, 2023 by
georgemarselis-nvi
new feature: mechanism to perform file and directory permission normalization within /rawdata
enhancement
New feature or request
#75
opened Sep 22, 2023 by
georgemarselis-nvi
feature request: Get demultiplexing script to calculate coverage for each sample
enhancement
New feature or request
#68
opened May 30, 2023 by
karinlag
1 of 2 tasks
feature request: implement unit testing
enhancement
New feature or request
later
#62
opened May 6, 2023 by
georgemarselis-nvi
feature request: break script into python modules
enhancement
New feature or request
later
#61
opened May 6, 2023 by
georgemarselis-nvi
feature request: time() everything
enhancement
New feature or request
later
#59
opened May 4, 2023 by
georgemarselis-nvi
5 tasks
feature request: notify which samples do not give their _2 side
enhancement
New feature or request
later
#56
opened Apr 26, 2023 by
georgemarselis-nvi
feature request: adjust fastqc -t switch according to the CPUs available in the system
enhancement
New feature or request
later
#55
opened Apr 26, 2023 by
georgemarselis-nvi
bug: before creating any file structure, ensure the project name exists in /data/rawdata
bug
Something isn't working
later
#54
opened Apr 23, 2023 by
georgemarselis-nvi
feature request: Ansible script that installs FastQC and changes the "processes" variable in the startup script from 4 to nCPUs
enhancement
New feature or request
later
#53
opened Apr 21, 2023 by
georgemarselis-nvi
feature request: Ansible script to install MultiQC from pip3
enhancement
New feature or request
later
#52
opened Apr 21, 2023 by
georgemarselis-nvi
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Updated in the last three days: updated:>2025-01-10.