Skip to content

WGS-TB/MongooseGUI3

Folders and files

NameName
Last commit message
Last commit date

Latest commit

12532bc · Nov 26, 2019

History

57 Commits
Apr 29, 2018
Jan 22, 2017
May 18, 2018
Jan 22, 2017
Jan 22, 2017
Apr 29, 2018
Mar 16, 2017
Jan 22, 2017
Aug 27, 2017
Jan 30, 2017
Jan 22, 2017
Jan 30, 2017
Jan 22, 2017
May 18, 2018
Jan 22, 2017
Jan 22, 2017
Jan 30, 2017
Apr 29, 2018
Aug 25, 2017
Jan 22, 2017
Jan 22, 2017
Jan 22, 2017
Jan 30, 2017
Jan 30, 2017
May 18, 2018
Jan 30, 2017
Aug 24, 2017
Jan 22, 2017
Feb 2, 2018
Jan 30, 2017
Jan 30, 2017
Jan 22, 2017
Sep 1, 2017
Jan 22, 2017
Nov 26, 2019
Jan 22, 2017
Jan 30, 2017
Jan 17, 2019
Jan 30, 2017
Jan 30, 2017
Jan 30, 2017
Jan 30, 2017
Jan 22, 2017

Repository files navigation

MongooseGUI3


MONGOOSE ( MetabOlic Network GrOwth Optimization Solved Exactly )

MONGOOSE is a package for structural analysis and refinement of constraint-based metabolic networks. Unlike other existing softwares, MONGOOSE uses exact rational arithmetic, which makes its results certifiably accurate. The MetaMerge algorithm (Chindelevitch et al, Genome Biology 2012, 13:r6, http://genomebiology.com/2012/13/1/r6), is based on and fully integrated with MONGOOSE. MONGOOSE's operation requires the esolver executable from QSOpt_ex, available to download at http://www.dii.uchile.cl/~daespino/ESolver_doc/main.html to be located in the working directory from which you run the Python script ModelProcessing.py. To check the results of an external program's solution to a metabolic problem please use the script ExternalChecker.py.

The GUI can be run using Docker. Please see our Dockerhub: https://hub.docker.com/r/ctlevn/mongoose/