Add optional dependencies

YosefLab · Feb 9, 2024 · 9526154 · 9526154
1 parent ee1b018
commit 9526154
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/.github/workflows/test_linux.yaml b/.github/workflows/test_linux.yaml
@@ -44,7 +44,7 @@ jobs:
 
       - name: Install scvi-tools from main
         run: |
-          pip install --no-cache-dir "scvi-tools @ git+https://github.com/scverse/scvi-tools@main"
+          pip install --no-cache-dir "scvi-tools[criticism] @ git+https://github.com/scverse/scvi-tools@main"
 
       - name: Install dependencies
         run: |

diff --git a/.github/workflows/test_linux_cuda.yaml b/.github/workflows/test_linux_cuda.yaml
@@ -48,7 +48,7 @@ jobs:
 
       - name: Install scvi-tools from main
         run: |
-          pip install --no-cache-dir "scvi-tools @ git+https://github.com/scverse/scvi-tools@main"
+          pip install --no-cache-dir "scvi-tools[criticism] @ git+https://github.com/scverse/scvi-tools@main"
 
       - name: Install dependencies
         run: |

diff --git a/.github/workflows/test_linux_pre.yaml b/.github/workflows/test_linux_pre.yaml
@@ -54,7 +54,7 @@ jobs:
 
       - name: Install scvi-tools from main
         run: |
-          pip install --no-cache-dir "scvi-tools @ git+https://github.com/scverse/scvi-tools@main"
+          pip install --no-cache-dir "scvi-tools[criticism] @ git+https://github.com/scverse/scvi-tools@main"
 
       - name: Install dependencies
         run: |

diff --git a/pyproject.toml b/pyproject.toml
@@ -20,7 +20,7 @@ urls.Documentation = "https://scvi-v2.readthedocs.io/"
 urls.Source = "https://github.com/YosefLab/scvi-v2"
 urls.Home-page = "https://github.com/YosefLab/scvi-v2"
 dependencies = [
-    "scvi-tools>=1.1.0rc2",
+    "scvi-tools>=1.1.0",
     "seaborn>=0.12.1",
     "statsmodels>=0.13.0",
 ]